G12373


Basic Information

Item Value
gene id G12373
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21857615 ~ 21858840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU14681
gacaaatataaattaagacaaataagctGATATTCTGGTGATTTCCTCAACTTTCTAGACGTTGCGCAATCGTGGAGCAGCGCGCTCACAGCCCCATTTAGttccattcttcttcttcttattattattcttattgcacctagtggtcaaaaataagaactgcaacaagcactaatagaggtCCATTGAGGCACTAATCATGCTGTCCCATGCTGGCTCTTTTCAGTGggcaggacagttaatgacagcgttgccaggaaaaaaaggaaaagtgtaGGTGCAGACAGtatgtctatgatgtacagaaccatttcaattgtaagatatattgtaaagattgggagagggaaaggagtggataatgtctgtacattaGAAATGAGTGTTCACCACTGGGACCTTGTTTCAAATGCAAaggctgaaaaaaagaagaaaaatatgtctcccttttccattGTTAAATTTGAGATAGTTTCAagtcatttgtgtgtgtttttttagatGTATTTGGCCTGGAAATTTTggtgaaacctggcaaccctcgttaatgatattaatatattagCTCTCtgggaaacacacctgctgtatcaaacCCAGTTGAACAAAGGTTCATCTGAAACCACTCAgaacaagctgctagactgtatgttGGATGACTATGTTATTGACTTCCAACTGCCTATTACAAgattactctaaaaattcactagatattaacttatagcataagtcaagtgtaaTGTGATAGTCTCTCGGCTTAATTTTGTTGAGGCTATATCGTTATTAATGCCACCCTGCATCACCATAACCTATGGTCACAAGCCACTGCTGTAAATCTATCAgtatatcaataaatatttaattacagatAATACATTTTGCAATTTATTAATAGGCAATTCTTAGCTACACTTGTAATACACATCCTTTTCAGCATTCTGTTAGTGTGGCTTGTTGGGTGCTggatttcaaaatgttttggaGAGAAAGTGAGATCATTGCTCTATGTATTTTCCTACAAAAAATGTATGAGATATAGAGAAATGGCTATATATTATGATGTGGGGGCACAAGAGCCTGTTTTACAAGGCGTAAATGGCTAAAGGAGGAATGCAGCACACTCCCATGCTCTAAACAGTGTCTTGTGTGTTTCTGCAATTTCTAAATTTACTGCCTTCCCTGAGAGCTCCTCCATTACTG

Function

NR:

description
PREDICTED: L-amino-acid oxidase-like

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU14681 True 1203 lncRNA 0.37 2 21857615 21858840

Neighbor

gene id symbol gene type direction distance location
mtbp mtbp coding downstream 85908 21748221 ~ 21771707 (-)
mrps2 mrps2 coding downstream 343260 21509640 ~ 21514355 (-)
setd2 setd2,LOC106606040,LOC107743179,LOC107673014,LOC107685560,LOC107752833,LOC107581536 coding downstream 378382 21455371 ~ 21479233 (-)
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding downstream 484921 21361624 ~ 21372694 (-)
slc6a19b slc6a19b,LOC108270036,LOC107743232,LOC107596751,LOC107685553,LOC107662664,LOC105905464 coding downstream 718345 21131082 ~ 21139270 (-)
deptor deptor,LOC107685573 coding upstream 34307 21893147 ~ 21925684 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding upstream 149395 22008235 ~ 22019237 (-)
gba gba,LOC107596705,LOC107598447 coding upstream 173628 22032468 ~ 22038626 (-)
dap3 dap3,LOC106597783 coding upstream 182295 22041135 ~ 22045666 (-)
rusc1 rusc1 coding upstream 228509 22087349 ~ 22101094 (-)
G11974 NA non-coding downstream 322416 21493358 ~ 21535199 (-)
G11961 NA non-coding downstream 333900 21475423 ~ 21523715 (-)
G11973 rbm12b non-coding downstream 364406 21487710 ~ 21493209 (-)
G11970 NA non-coding downstream 373916 21480619 ~ 21483699 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding downstream 618339 21238035 ~ 21239276 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding upstream 13436 21872276 ~ 21960299 (-)
G12377 NA non-coding upstream 68619 21927459 ~ 21930143 (-)
LOC113542638 NA non-coding upstream 75843 21934683 ~ 21937785 (-)
G12498 NA non-coding upstream 474285 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 831136 22689976 ~ 22690185 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 582274 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2033932 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2110732 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2111675 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2154455 19702611 ~ 19703160 (-)
aicda aicda other upstream 827567 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 1042511 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1261632 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1274086 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1618318 23477158 ~ 23527323 (-)

Expression


Co-expression Network