G1216 (tgfb2,LOC106605021,LOC106584161)


Basic Information

Item Value
gene id G1216
gene name tgfb2,LOC106605021,LOC106584161
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2163324 ~ 2165381 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1506
TGGCGTATTATTCCAGCAGATGAAGGGGGGTCTAATGAAATTTGTAGGCCTGTTTACTGAAACATTGTTGTGGAAATGACCTGTGTGAAAAGGTGTAGGTAATCCAGCACATGAAAGTGGCTTCATGCTGGGGATCAAAAGTAACACACAGGCTATAGGtgcactctctttctctttctagtttgtttttttaatcaatgcaTGGATGCATGAGCATGTGCTGGCATTTCAGGTATGTTGTTCTAGAAAGCAGACACTTTGTGTGCTTGCCAGCATTTACAACAGCTTAAAGAAGTCATCTCTAAAAACCTGCAGCTGAGAAGTGCTCAGAATATGTAATACATTTATGTAGGGAGTAAGAAGACGTTTGGGATTGGCCTTAATTTAGTTTCATTCTTGCCAAAGATTACTGCACGCATtcttcagatcagatcagatgcCACAAAAGGCCCACGGTGTAAGTGAGACAATAGCTGGTTAAAACGCTATGTGTAGTGTTTACTGAGGGTGAAGTTATTCCACCCATCTTGCATTTCCCAAGCTGCAATCACTAAAACTAAACTGTATTCATATATAAGGTAcatatgttaataaaataaaaagcccaGTTTAGGATATAAAGTCTGCGCAATAAACAATCCACAAATTCGCACGCGCATAATGCTGGAAAAGTGTACTGTAGGATATTAAGACACTCAGTAGCAGGTATGCCATGGTGCATCACTCACTCTCGGAGGGGTAGAAGGGCTGCATGTCGATCTTGTGCACCTCCTTGGCGTAGTACTCCTCCTCGCTGCGCTGGCGCTCGCAGGTGGCGGCGCGCTCGTTGGCCTTCTCCTGCAGCAGGTCGCGGGTGCTGTTGTAGATGGCGATGATATCCCGGGACACGTCTTCAGGCTCCGGGAACTCGTCCGGCGGCTTGCTGAGCTTCAGCTTGCTTAGGATCTGGCCGCGGATCGCCTCGATGCGCTTCTTCATGAACTGGTCCATGTCTAAGGTGCTGCACGTGGACAAGCCGAGCGCCACGGCCACTAGATCCAGGCTCAGGAGGAGGCTCACTACGAAGAGGTTCATTTTCGGGGGAGGATAGCTGTGTTCCTCCACAGTTTTCAAAAAAAGTAGTTTTAGAGCTATAATAAGGTTTGTGTTTGCTGAATGAAGCGCACGTATTAAAGAAAAGGAGACGATAAATGCATTTTGTAGCCTATCGCCAGATCACCAGATAAAAGTTTGACGTGAAGGGTTTAGGCTGTACTAGGATCATTAGTCACGGATCTTTTTTGGATATCCATTTGGCGTGACAGCACTGAGAAGTTGTtaaatggctttaaaaaaaaataaccaaaaatcCTGGAAGCGAGCAACAGATCGCCTATGTGATCACACCGCAAGCTGAAGAGTCACAGTCTCGGCCATCTGAAGTTCAGTTCTGCGAGGAGCGAATAGCACGAGGATATGCGGGTTTACGCACCTCCACCGCATCCAAGCGCCCACAAACCCCTGCGGTGTATACCGCGAGCGCGCCTCACGCGCTGCGCTTTAAAACTCGGCACGGTCCGCTCGTGCGCCGCCGCGCATCTCCACCGCCTGCCGAGTCGCGTAGGATCCGAGCGCGCGCGTTATAACGTCGCAGAGGAAGCTTAAGAGTGCAGTGCGCGCGAGCACGTCCGGACGGTCAGAAAGACGCGGTGAGACAAGAACGGAACGAACGAGGCACAGAAGTTATTTTCCCTTCGGCGCGACGGAAAGAGCGTTAGCGCGCTTCTCCATCCCCTCTTGTGGAAAACGCCAGTGCCGCGTGCCAGCGCGCACCATCTCCTGGCGGCTGGCTGGACAGAAAGTCAGCTTTATAAAGGGGACGCACCTCACCACGTGCTTTCGTGCTCTTTCACACCGAGCTTGTGGTCATCGCCTTCAGACCGAGAGGACTAGACTCCAACCTACGCGTACA

Function

symbol description
tgfb2 Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within roof of mouth development and sclerotome development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including mandibular arch skeleton; mesoderm; otic placode; pericardial region; and periocular mesenchyme. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 4 and colorectal cancer. Orthologous to human TGFB2 (transforming growth factor beta 2).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1506 True 1951 lncRNA 0.39 2 2163324 2165381

Neighbor

gene id symbol gene type direction distance location
LOC113526881 LOC108269985 coding downstream 8146 2151756 ~ 2155178 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding downstream 15344 2136806 ~ 2147980 (-)
pou3f1 pou3f1,LOC107755232,LOC103364690 coding downstream 235321 1924550 ~ 1928003 (-)
fhl3a fhl3,fhl3a,LOC107587754,LOC107716861,LOC107704953 coding downstream 282750 1850900 ~ 1880574 (-)
gnl2 gnl2,LOC107700739 coding downstream 405568 1740743 ~ 1757756 (-)
preb preb coding upstream 87875 2253256 ~ 2262331 (-)
cnih4 cnih4,LOC107703927 coding upstream 129468 2294849 ~ 2299066 (-)
rspo3 rspo3 coding upstream 147728 2313109 ~ 2326539 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854 coding upstream 259370 2424751 ~ 2438715 (-)
osbpl10b osbpl10,LOC108434204,LOC107713824,LOC108270254,LOC107600617,LOC107668315 coding upstream 569130 2734511 ~ 2775211 (-)
LOC113526561 NA non-coding downstream 33897 2112356 ~ 2129427 (-)
G1100 NA non-coding downstream 290624 1869646 ~ 1872700 (-)
G1089 NA non-coding downstream 313597 1849526 ~ 1849727 (-)
G1029 NA non-coding downstream 512836 1649521 ~ 1650488 (-)
LOC117599299 NA non-coding downstream 517891 1644042 ~ 1645433 (-)
G1237 NA non-coding upstream 84384 2249765 ~ 2250408 (-)
G1236 NA non-coding upstream 85569 2250950 ~ 2252392 (-)
G1238 NA non-coding upstream 98994 2264375 ~ 2264574 (-)
G1303 NA non-coding upstream 212447 2377828 ~ 2378028 (-)
G1422 NA non-coding upstream 383397 2548778 ~ 2553558 (-)
G502 NA other downstream 1564158 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1976477 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1997255 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 2108171 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 2142041 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 223267 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 275465 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 752842 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1078454 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1492799 3658180 ~ 3659319 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding CM030121.1 CM030121.1 13539972 ~ 13541154 (+)