zgc:92606 (zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403)


Basic Information

Item Value
gene id zgc:92606
gene name zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22901351 ~ 22908140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU15196
gacatttaaaaaaaaaaaaaaaaagaaactaaaaattTCGAAAAGAATTGGAGTTGTACATTTCAGGATCCTGATATCTTTGTTTTGTTAAAGCCGTAACGGAAGGTTTTAGCTGAATCCCtctgctgaggaaaaaaaaagATGAGTAGCCAGTACCAGCGCTGCGTTCCGTTCGAGGCCAGGAGattggagggagagagagttcGTGCCAAGCATCCGGACAAAATTCCGGTCATTGTAGAGAGAGCCGCGAGATCACGTGCCCCTGAACTTGACAAAAAGAAATACCTCGTTCCCTCAGAcctgacagTTGGCCAGCTGTGCTTCCTGATCAGACAGCGAGTATGCATAAGGCCAGAAGAAGctctcttcttttttgttaaaaattccctccctccttccagCTCCCCGCTTTCTGTTGTGTATGAgGAACACCACGAGAAGGACCTGTTCCTGTACATGACCTACAGCAACGAGAGTGTGTACGGCGCCTGAGAGGATAAAAAATTTAGaatgagaggaagaggaagccAGTGAGGGACTTTGGGATGTGATAGAGGAAGGGATGGAATTTAAACAGTGGTGTGgtgacatttttattgttttaccactattaatccattttgtatGAAACTCAGCTTGCAGCGTTGAACATCAGTGTGGTTTGAAGGATGTAACTGGTTTGTGTTTAACTAGAATgggtttaattacatttaacaatGAAAGTAAGGcattgtaatataaatatacgtgacggagggagagaagagatgTAACTGACATAAAAAAGTGAATGGGGGCAGTTTCATGTTCGTGGTGCAGTACAAAATTAACCCACATTTCCATGACTCTGTCCCAGGAGTGACTCACCtgtatttaatgaaaatattattttttgtaaaagtaTATGATAAATTTTGTGGTCAAAAAAGACAGATATGCTGTGTTGTTGTGCTGGtgtgggtttttatttatttttttcaagtgtGTGATATGcacaaaacacatcaaaaatTCAGAACTTACTGAactatgtaaatatacagtatggccaaatgtttgtgtacatctgaccatcacaaccatatatgtgttttgaacatcccattccagtccccctttgctgttataatcatCTCCACTCTattgggaaggctttccgcgagattttggagtgtgactgtagggattgtccattcagccacaagagcattagtgagtttGGGCACTGTTGAGAAGGTTTAGTGCacagtctgtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggccactcaagttcttctacactaaccttggcaaaccatatttTCATGGACctagctttgtgcacaggggcattgtcatgctggaacaggtttgtgcctcttacttacagtgaagggaaactgtaatgctacagcacacaaagacattctatacaattgtggcaacagtttggggaagaacacGTAcagtatgagtgtgatggtcaggtttccataaacctttggccatatagtgtatgtaaaacACCACAAAAACTACCTTGAGTTTGAAGTGACTAAATCACTGATATATTGCCAACATATCAGCTTTAATGAGGTCTGACTGTTAACAATTTGAGAAGTGATATTTCAAAGCAACCTGAGGCAACTCAGAGTTCCAAAACAGCCAGATAGTGGGAGTCCGAACTGCAGGTTCATCTTTCATAATATAGGAACAGTTATTAAATGTTTCAAGGGGAACAGTATTAAAAGCTGTGGCAGTGTATGGTAAGGACAAATGGTATCAGCAAA
>TU15197
gacatttaaaaaaaaaaaaaaaaagaaactaaaaattTCGAAAAGAATTGGAGTTGTACATTTCAGGATCCTGATATCTTTGTTTTGTTAAAGCCGTAACGGAAGGTTTTAGCTGAATCCCtctgctgaggaaaaaaaaaAGATGAGTAGCCAGTACCAGCGCTGCGTTCCGTTCGAGGCCAGGAGattggagggagagagagttcGTGCCAAGCATCCGGACAAAATTCCGGTCATTGTAGAGAGAGCCGCGAGATCACGTGCCCCTGAACTTGACAAAAAGAAATACCTCGTTCCCTCAGAcctgacagTTGGCCAGCTGTGCTTCCTGATCAGACAGCGAGTATGCATAAGGCCAGAAGAAGctctcttcttttttgttaaaaattccctccctccttccagCTCCCCGCTTTCTGTTGTGTATGAgGAACACCACGAGAAGGACCTGTTCCTGTACATGACCTACAGCAACGAGAGTGTGTACGGCGCCTGAGAGGATAAAAAATTTAGaatgagaggaagaggaagccAGTGAGGGACTTTGGGATGTGATAGAGGAAGGGATGGAATTTAAACAGTGGTGTGgtgacatttttattgttttaccactattaatccattttgtatGAAACTCAGCTTGCAGCGTTGAACATCAGTGTGGTTTGAAGGATGTAACTGGTTTGTGTTTAACTAGAATgggtttaattacatttaacaatGAAAGTAAGGcattgtaatataaatatacgtgacggagggagagaagagatgTAACTGACATAAAAAAGTGAATGGGGGCAGTTTCATGTTCGTGGTGCAGTACAAAATTAACCCACATTTCCATGACTCTGTCCCAGGAGTGACTCACCtgtatttaatgaaaatattattttttgtaaaagtaTATGATAAATTTTGTGGTCAAAAAAGACAGATATGCTGTGTTGTTGTGCTGGtgtgggtttttatttatttttttcaagtgtGTGATATGcacaaaacacatcaaaaatTCAGAACTTACTGAactatgtaaatatacagtatggccaaatgtttgtgtacatctgaccatcacaaccatatatgtgttttgaacatcccattccagtccccctttgctgttataatcatCTCCACTCTattgggaaggctttccgcgagattttggagtgtgactgtagggattgtccattcagccacaagagcattagtgagtttGGGCACTGTTGAGAAGGTTTAGTGCacagtctgtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggccactcaagttcttctacactaaccttggcaaaccatatttTCATGGACctagctttgtgcacaggggcattgtcatgctggaacaggtttgtgcctcttacttacagtgaagggaaactgtaatgctacagcacacaaagacattctatacaattgtggcaacagtttggggaagaacacGTAcagtatgagtgtgatggtcaggtttccataaacctttggccatatagtgtatgtaaaacACCACAAAAACTACCTTGAGTTTGAAGTGACTAAATCACTGATATATTGCCAACATATCAGCTTTAATGAGGTCTGACTGTTAACAATTTGAGAAGTGATATTTCAAAGCAACCTGAGGCAACTCAGAGTTCCAAAACAGCCAGATAGTGGGAGTCCGAACTGCAGGTTCATCTTTCATAATATAGGAACAGTTATTAAATGTTTCAAGGGGAACAGTATTAAAAGCTGTGGCAGTGTATGGTAAGGACAAATGGTATCAGCAAA
>XM_026940272.2
gggtttgttgttgtttttagtaGTGGAAATAGATCGtcgacatttaaaaaaaaaaaaaaaaagaaactaaaaattTCGAAAAGAATTGGAGTTGTACATTTCAGGATCCTGATATCTTTGTTTTGTTAAAGCCGTAACGGAAGGTTTTAGCTGAATCCCtctgctgaggaaaaaaaaagAGATGAGTAGCCAGTACCAGCGCTGCGTTCCGTTCGAGGCCAGGAGattggagggagagagagttcGTGCCAAGCATCCGGACAAAATTCCGGTCATTGTAGAGAGAGCCGCGAGATCACGTGCCCCTGAACTTGACAAAAAGAAATACCTCGTTCCCTCAGAcctgacagTTGGCCAGCTGTGCTTCCTGATCAGACAGCGAGTATGCATAAGGCCAGAAGAAGctctcttcttttttgttaaaaattccctccctccttccagCTCCCCGCTTTCTGTTGTGTATGAgGAACACCACGAGAAGGACCTGTTCCTGTACATGACCTACAGCAACGAGAGTGTGTACGGCGCCTGAGAGGATAAAAAATTTAGaatgagaggaagaggaagccAGTGAGGGACTTTGGGATGTGATAGAGGAAGGGATGGAATTTAAACAGTGGTGTGgtgacatttttattgttttaccactattaatccattttgtatGAAACTCAGCTTGCAGCGTTGAACATCAGTGTGGTTTGAAGGATGTAACTGGTTTGTGTTTAACTAGAATgggtttaattacatttaacaatGAAAGTAAGGcattgtaatataaatatacgtgacggagggagagaagagatgTAACTGACATAAAAAAGTGAATGGGGGCAGTTTCATGTTCGTGGTGCAGTACAAAATTAACCCACATTTCCATGACTCTGTCCCAGGAGTGACTCACCtgtatttaatgaaaatattattttttgtaaaagtaTATGATAAATTTTGTGGTCAAAAAAGACAGA

Function

symbol description
zgc:92606 Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagosome assembly; autophagy of mitochondrion; and cellular response to nitrogen starvation. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to several human genes including GABARAP (GABA type A receptor-associated protein).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor-associated protein-like 1-like isoform X2

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15196 False 1820 TUCP 0.41 5 22901351 22908102
TU15197 True 1821 TUCP 0.41 5 22901351 22908102
XM_026940272.2 False 977 mRNA 0.41 5 22902234 22908140

Neighbor

gene id symbol gene type direction distance location
LOC113542547 NA coding downstream 8724 22887194 ~ 22892627 (-)
LOC113542545 NA coding downstream 15732 22875687 ~ 22885619 (-)
LOC113542546 NA coding downstream 29236 22860265 ~ 22872115 (-)
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292 coding downstream 155286 22731675 ~ 22746065 (-)
il11a il11 coding downstream 191978 22704222 ~ 22709373 (-)
tpi1b tpi1,tpi1b,LOC107700200 coding upstream 17413 22925553 ~ 22931345 (-)
gnb3a gnb3a,gnb3,LOC108266619,LOC108432288,LOC103042898,LOC106605091,LOC106521057 coding upstream 97371 23005511 ~ 23010223 (-)
p3h3 p3h3 coding upstream 106715 23014855 ~ 23025868 (-)
LOC113542387 LOC108266442 coding upstream 242579 23150719 ~ 23157164 (-)
LOC113542343 LOC108266461 coding upstream 262260 23170400 ~ 23178284 (-)
G12808 NA non-coding downstream 31940 22869159 ~ 22869411 (-)
G12805 NA non-coding downstream 37333 22863485 ~ 22864018 (-)
G12797 NA non-coding downstream 71480 22825000 ~ 22829871 (-)
G12657 NA non-coding downstream 144737 22754738 ~ 22756614 (-)
G12656 NA non-coding downstream 147410 22749613 ~ 22753941 (-)
G12816 NA non-coding upstream 11145 22919285 ~ 22928564 (-)
G12819 NA non-coding upstream 30086 22938226 ~ 22938796 (-)
G12917 NA non-coding upstream 223135 23131275 ~ 23131498 (-)
G13361 NA non-coding upstream 597880 23506020 ~ 23506298 (-)
G13369 NA non-coding upstream 619550 23527690 ~ 23527940 (-)
aicda aicda other downstream 209547 22686407 ~ 22691804 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 1626010 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 3077668 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 3154468 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 3155411 19745650 ~ 19745940 (-)
LOC113542417 NA other upstream 212332 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 224786 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 569018 23477158 ~ 23527323 (-)
dedd1 dedd2 other upstream 751383 23659523 ~ 23674479 (-)
LOC113542286 riiad1 other upstream 1234459 24142599 ~ 24149267 (-)

Expression


Co-expression Network