dedd1 (dedd2)


Basic Information

Item Value
gene id dedd1
gene name dedd2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23659523 ~ 23674479 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU15915
gactaaacaataataataataatattattcctGTAAGATCAACTAGCCTAGCATAGCgactaaacaataataataataatattattcctGTAAGATCAACTAGCCTAGCATAGCgactaaacaataataataataatattattcctGTGAGATAAACTAGCCTAGCATAGcgactaaacaataataataataataatattcctgTGAGATAAACTAGCCTAGCATAGCgactaaacaataataatattccTGTGAGATAAACTAGCCTAGCATAGCgactaaacaataataataataatattc
>XM_026939999.2
gtgtgtgtgtgtgtgtgtgagagagtgtgagagagcacatgattggtcagtgtgtgttgttcttcagCCCGGTCACCGCCCACTGCTGTAAAGTGATGTTTCGAGAAATTTGACCGCGGTCATCCTTTTACTTTGTTCCAAAACCGACTTGACAGCAGTTAACCATGGCAGCATGCTCGAGATATTCTCTGTACTGGGAGGAGACTGACTGCTTGAGCTACTATGACATGCTGTCTCTTCATGAAGTCTTTGAAATTGTGGGTTCCCAGTTGACAGAGACTGACGTCGAAGTCCTGTCATTCCTTCTTGACGAAGTCTATCCTGCCAGACACCCTCTTGATCCAGAAAGCTGGACTGAAGAGGTTTCGCCAGACTCTGATTCACCTGTAAATTCTCCTTGCCCGCGTCTTTTGGAGGCTTGGCGCAGGATCCGCCATACGGGAGAGCCAGGTCCCTTTGCTGCCCGTTGCAGCCCTAAGAGCGGTGTTGCACTGTTGCTGGAACTGGAGAGACGTGGCTTCTTGAATGAAGCAAATCTGGAGCCTCTGTTGCAGCTACTTCGAATTCTTACACGGCACGACCTCTTAGCATTTGTCTCCAGTAAGAAGAGAAGAACAGTGTCACCAGAGAGAGAACCTGTAAGCTATGTGGAAAGCAgagaacacgcacacacaagctCACAGTCAGAGCTGGCAAACACACACGAGTCTCAGTGGAGGGCAGGTGTTGGCTCAGCTGTCAGAGCATCTGCACCAGCACGAAGGAGAAGGGGAAGAGGGCGAGGCCGGACAAGAAAGGCCAGGGATACGTCAGAAAGCATAACTCAGCCTGCACCTAACAAAGTGACCTGCGACATCCGGCTGCGTGTTCGGGCTGAGTACTCGGAGCACGAGTCAGCCCTGCGTGCCAGGGTCTCCTCGGATAAGCAACAGCCTCTGGAGCGCCAGTTTGAACTTTTCAGCCGAGCCAGCCTTCTGCTGCGCGCTCGTGACCTTGGCTCCATCGTCTGTGACATCAAGTTCTCTGAGCTGCAGAACCTGGATGCATTCTGGGCTGACTACCTGAGCGGTGCGCTGCTGGAAGCACTCAAGGGCGTTTTCATCACAGACTCGCTGAAGAGAGCAGCTGGGCAAGAGGGCGTGAGGCTGCTGGTCAGCGTCGACCAGGACGACTATGAAGAGGGCAGGAAGCTACTGCTCAGCAACcagacacacagcacagcaaGTGGCCCAGTGCACAGGCCCTGAGAGATATAAAGGCTGCCAAAAAGAagagtgaagaaaaaagaaaagtgctcTTGGGTTAATTTAATCACGACAGTGCAGGAAGGGCTGTGTATGGACTGACAGTATACAAAGAGAGATTCGAATTCAAGTAAGGTTGAAAGAGACACAAACACTTTATCAAACAGGTACCAAGTATGATAGATGTATGTTTGTAGGTTAATCGCAGCTTCCTGTGCTGCTGGTAATTTGTGCATTACAATATGTCTTTGGTTACTCTACAGATTGAAATGAAGGAGAGCCAGCTGAAACtggttttgtattttatgttaaGGGTAGCTGGGCGATAGACAAGAATTTGCCATGATTTTGCTCTAATTGTGTTGGTTAGGCATCTACATAGAAGAAGAGGATACTGAGCTTAATTAGGTAGTTTGTAACCAGAGGTATTGTTCTGAAAGTACCAAGATTGGTCCCCAAAGACGGTCACTATTAGTCACCTAATCACAAAAATATCCCTAGTACGGTGTCTGTTTTATACAagttggtttgtgtgtgtgctcaccatAGCAGGAAGCTGAAGAAATGTAACAGTGGTATTAGCTTACCTGGTAATTATGGGTATTTATGGAACAGATGTAACCTAACATCTGCGCAATAAACACCAGCATTCCAAGACCCAGGTCCAAAATGTCTCCAAAAGAGACACTCGGAGACAAGTGACGAGTCATTTCTAGTGAAAGGGATTCTGAAAAGAACTCTTTCACTCGAACAGATGATCCAGATGAGCTGCAGTCTTCTTGACCTTAAGTCACAACCACAATGAGcctttatatgattttttttattaagaataTATGGGTTAATACATATGTTATCTTTGtatcatttaaagaaaatgtaaacaaaaagtaGTCGTCATGGGTAGTGATTCGTCTATACTCTTGTTTGTCTGCTGAGtcagttttttctttgtctcttatattttccttctgtttttgtttaatgttttaatttaatgaacGCATGTATAGacgtttatatttaaatttcaaatttaattcTGAATAAAATACTACCACAAGC
>XM_026940000.2
aatattattcctGTAAGATCAACTAGCCTAGCATAGCgactaaacaataataataataatattattcctGTAAGATCAACTAGCCTAGCATAGCgactaaacaataataataataatattattcctGTGAGATAAACTAGCCTAGCATAGcgactaaataataataataataatattattcctGTAAGATAAACTAGCCTAGCATATgactaaacaataataataataataatattcctgTGAGATAAACTAGCCTAGCATAGCgactaaacaataataatattccTGTGAGATAAACTAGCCTAGCATAGCgactaaacaataataataataatattcctgTAAGATAAACTAGCCTAGCATAGCgactaaacaataataatattgttcCTGAGATAAACTAGCCTAGCATAGCgactaaacaataataataatattattcctGTAAGATAAACTAGCCTAGCATAGCgactaaacaataataataatattattcctGTGAGATAAACTAGCCTAGCATAGCGACTGATTAGCTAAGCACCTAGCAAACACTTCCTGCTTTTTGTCAATATAAAATTCTGAAATACAAATTTGACTCCTTTTTGTAGTCCCACAGAGCTTCATAACCCGAACCGACTTGACAGCAGTTAACCATGGCAGCATGCTCGAGATATTCTCTGTACTGGGAGGAGACTGACTGCTTGAGCTACTATGACATGCTGTCTCTTCATGAAGTCTTTGAAATTGTGGGTTCCCAGTTGACAGAGACTGACGTCGAAGTCCTGTCATTCCTTCTTGACGAAGTCTATCCTGCCAGACACCCTCTTGATCCAGAAAGCTGGACTGAAGAGGTTTCGCCAGACTCTGATTCACCTGTAAATTCTCCTTGCCCGCGTCTTTTGGAGGCTTGGCGCAGGATCCGCCATACGGGAGAGCCAGGTCCCTTTGCTGCCCGTTGCAGCCCTAAGAGCGGTGTTGCACTGTTGCTGGAACTGGAGAGACGTGGCTTCTTGAATGAAGCAAATCTGGAGCCTCTGTTGCAGCTACTTCGAATTCTTACACGGCACGACCTCTTAGCATTTGTCTCCAGTAAGAAGAGAAGAACAGTGTCACCAGAGAGAGAACCTGTAAGCTATGTGGAAAGCAgagaacacgcacacacaagctCACAGTCAGAGCTGGCAAACACACACGAGTCTCAGTGGAGGGCAGGTGTTGGCTCAGCTGTCAGAGCATCTGCACCAGCACGAAGGAGAAGGGGAAGAGGGCGAGGCCGGACAAGAAAGGCCAGGGATACGTCAGAAAGCATAACTCAGCCTGCACCTAACAAAGTGACCTGCGACATCCGGCTGCGTGTTCGGGCTGAGTACTCGGAGCACGAGTCAGCCCTGCGTGCCAGGGTCTCCTCGGATAAGCAACAGCCTCTGGAGCGCCAGTTTGAACTTTTCAGCCGAGCCAGCCTTCTGCTGCGCGCTCGTGACCTTGGCTCCATCGTCTGTGACATCAAGTTCTCTGAGCTGCAGAACCTGGATGCATTCTGGGCTGACTACCTGAGCGGTGCGCTGCTGGAAGCACTCAAGGGCGTTTTCATCACAGACTCGCTGAAGAGAGCAGCTGGGCAAGAGGGCGTGAGGCTGCTGGTCAGCGTCGACCAGGACGACTATGAAGAGGGCAGGAAGCTACTGCTCAGCAACcagacacacagcacagcaaGTGGCCCAGTGCACAGGCCCTGAGAGATATAAAGGCTGCCAAAAAGAagagtgaagaaaaaagaaaagtgctcTTGGGTTAATTTAATCACGACAGTGCAGGAAGGGCTGTGTATGGACTGACAGTATACAAAGAGAGATTCGAATTCAAGTAAGGTTGAAAGAGACACAAACACTTTATCAAACAGGTACCAAGTATGATAGATGTATGTTTGTAGGTTAATCGCAGCTTCCTGTGCTGCTGGTAATTTGTGCATTACAATATGTCTTTGGTTACTCTACAGATTGAAATGAAGGAGAGCCAGCTGAAACtggttttgtattttatgttaaGGGTAGCTGGGCGATAGACAAGAATTTGCCATGATTTTGCTCTAATTGTGTTGGTTAGGCATCTACATAGAAGAAGAGGATACTGAGCTTAATTAGGTAGTTTGTAACCAGAGGTATTGTTCTGAAAGTACCAAGATTGGTCCCCAAAGACGGTCACTATTAGTCACCTAATCACAAAAATATCCCTAGTACGGTGTCTGTTTTATACAagttggtttgtgtgtgtgctcaccatAGCAGGAAGCTGAAGAAATGTAACAGTGGTATTAGCTTACCTGGTAATTATGGGTATTTATGGAACAGATGTAACCTAACATCTGCGCAATAAACACCAGCATTCCAAGACCCAGGTCCAAAATGTCTCCAAAAGAGACACTCGGAGACAAGTGACGAGTCATTTCTAGTGAAAGGGATTCTGAAAAGAACTCTTTCACTCGAACAGATGATCCAGATGAGCTGCAGTCTTCTTGACCTTAAGTCACAACCACAATGAGcctttatatgattttttttattaagaataTATGGGTTAATACATATGTTATCTTTGtatcatttaaagaaaatgtaaacaaaaagtaGTCGTCATGGGTAGTGATTCGTCTATACTCTTGTTTGTCTGCTGAGtcagttttttctttgtctcttatattttccttctgtttttgtttaatgttttaatttaatgaacGCATGTATAGacgtttatatttaaatttcaaatttaattcTGAATAAAATACTACCACAAGC
>XM_026940001.2
gtgtgtgtgtgtgtgtgtgagagagtgtgagagagcacatgattggtcagtgtgtgttgttcttcagCCCGGTCACCGCCCACTGCTGTAAAGTGATGTTTCGAGAAATTTGACCGCGGTCATCCTTTTACTTTGTTCCAAAACCGACTTGACAGCAGTTAACCATGGCAGCATGCTCGAGATATTCTCTGTACTGGGAGGAGACTGACTGCTTGAGCTACTATGACATGCTGTCTCTTCATGAAGTCTTTGAAATTGTGGGTTCCCAGTTGACAGAGACTGACGTCGAAGTCCTGTCATTCCTTCTTGACGAAGTCTATCCTGCCAGACACCCTCTTGATCCAGAAAGCTGGACTGAAGAGGTTTCGCCAGACTCTGATTCACCTGTAAATTCTCCTTGCCCGCGTCTTTTGGAGGCTTGGCGCAGGATCCGCCATACGGGAGAGCCAGGTCCCTTTGCTGCCCGTTGCAGCCCTAAGAGCGGTGTTGCACTGTTGCTGGAACTGGAGAGACGTGGCTTCTTGAATGAAGCAAATCTGGAGCCTCTGTTGCAGCTACTTCGAATTCTTACACGGCACGACCTCTTAGCATTTGTCTCCAGTAAGAAGAGAAGAACAGTGTCACCAGAGAGAGAACCTGTAAGCTATGTGGAAAGCAgagaacacgcacacacaagctCACAGTCAGAGCTGGCAAACACACACGAGTCTCAGTGGAGGGCAGGTGTTGGCTCAGCTGTCAGAGCATCTGCACCAGCACGAAGGAGAAGGGGAAGAGGGCGAGGCCGGACAAGAAAGGCCAGGGATACGTCAGAAAGCATAACTCAGCCTGCACCTAACAAAGTGACCTGCGTGAAAATACAGTGTTTTGTGCAAAATACACTTAGCAAGCAAGCTCCTCCGTCCTTAAGAGGCACACCAGGCTGTCAGAGATGGGGGTGGCCATTTTGGGCCGTTATGATGCAGGATGATTCAGTGTCTGAATCAGACAGACACACTGCATTGCTCATCAAACCGAGACTGCTGACTCTGCCAGTGTTCAGATTAGCACATTTAAGTGCCTGTCCATTTATTAATAACGACCTGCTTTGTAAGTGATCTGTAAAtctttaacaaaccaaaaaggtTGGGaaactatttattaaaattgttaaaacA

Function

symbol description
dedd2 Predicted to enable DNA binding activity. Involved in apoptotic nuclear changes; extrinsic apoptotic signaling pathway via death domain receptors; and positive regulation of extrinsic apoptotic signaling pathway. Located in nucleolus and nucleoplasm.

NR:

description
PREDICTED: DNA-binding death effector domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15915 False 303 lncRNA 0.28 2 23673787 23674145
XM_026939999.2 False 2309 mRNA 0.46 6 23659523 23674479
XM_026940000.2 True 2798 mRNA 0.42 6 23659523 23674125
XM_026940001.2 False 1157 mRNA 0.49 5 23670371 23674479

Neighbor

gene id symbol gene type direction distance location
pou2f2a pou2f2,pou2f2a,LOC107671217,LOC107717432,LOC107582157 coding downstream 24598 23592579 ~ 23634925 (-)
erfl3 erf coding downstream 80232 23537819 ~ 23579291 (-)
gsk3ab gsk3a,LOC103362704 coding downstream 191611 23449585 ~ 23467912 (-)
znf574 LOC108266406 coding downstream 214588 23427178 ~ 23444935 (-)
grik5 grik5,LOC107717427,LOC107551699,LOC107700189,LOC107671209 coding downstream 240785 23348325 ~ 23418738 (-)
atp1a3b atp1a3b,LOC108432319,LOC108266346,LOC107671176,LOC107723432,LOC107582039,LOC107551687 coding upstream 5813 23680292 ~ 23702357 (-)
si:ch73-22o12.1 LOC108266341,LOC108261109 coding upstream 57123 23731602 ~ 23795116 (-)
vars1 vars,LOC107700174,LOC107723495,LOC107717441 coding upstream 152959 23827438 ~ 23847366 (-)
LOC113542255 LOC108266323 coding upstream 176284 23850763 ~ 23853697 (-)
ino80e ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446 coding upstream 181604 23856083 ~ 23862923 (-)
G13369 NA non-coding downstream 131583 23527690 ~ 23527940 (-)
G13361 NA non-coding downstream 153225 23506020 ~ 23506298 (-)
G12917 NA non-coding downstream 528025 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 720727 22938226 ~ 22938796 (-)
G12816 NA non-coding downstream 730959 22919285 ~ 22928564 (-)
G13424 NA non-coding upstream 139798 23814277 ~ 23816058 (-)
G13438 NA non-coding upstream 236600 23911079 ~ 23912280 (-)
G13452 NA non-coding upstream 347051 24021530 ~ 24021918 (-)
G13465 LOC108266188 non-coding upstream 367775 24042254 ~ 24042606 (-)
G13467 NA non-coding upstream 368965 24043444 ~ 24043657 (-)
cicb cic,LOC107582035 other downstream 132200 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 493939 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 530210 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 751383 22901351 ~ 22908140 (-)
aicda aicda other downstream 967719 22686407 ~ 22691804 (-)
LOC113542286 riiad1 other upstream 468120 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 561813 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 717051 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 861381 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 877819 24552298 ~ 24561375 (-)

Expression


Co-expression Network