G13438


Basic Information

Item Value
gene id G13438
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23911079 ~ 23912280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU15956
CTAAaccaatataaatacacaaatctaAAATGCACAAACAGCAACATGGACACAAGAATGACAGATTCAGTGACTTTATGTTTATAGAATGAATAGCAGCCATATTGTATTAGTCAGTGTATCATAGCAGCCATATTGTATCAGTCCTGTATCATAGCAGCCATATTGTATCAGTCCTGTATCATAGCAGCCATATTGTATTAGTCCTGTATCATAGCAGCCATATTGTATCAGTCCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15956 True 241 lncRNA 0.35 2 23911079 23912280

Neighbor

gene id symbol gene type direction distance location
mdc1 mdc1 coding downstream 1958 23891489 ~ 23909121 (-)
si:dkeyp-77h1.4 LOC108266289 coding downstream 19798 23872932 ~ 23891281 (-)
ino80e ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446 coding downstream 48156 23856083 ~ 23862923 (-)
LOC113542255 LOC108266323 coding downstream 57382 23850763 ~ 23853697 (-)
vars1 vars,LOC107700174,LOC107723495,LOC107717441 coding downstream 63713 23827438 ~ 23847366 (-)
tubb5 tubb,LOC102780606,LOC107700172,LOC107717448,LOC107086735,LOC101486495 coding upstream 809 23913089 ~ 23918564 (-)
ddr1 ddr1,LOC107551675,LOC107723396 coding upstream 22464 23934744 ~ 23977540 (-)
gnl1 gnl1,LOC107717451,LOC107671206,LOC107551674,LOC107700168,LOC107723463,LOC107582120 coding upstream 79384 23991664 ~ 24001583 (-)
znf384b znf384 coding upstream 90196 24002476 ~ 24021059 (-)
cops7a cops7a,LOC108432301,LOC107717457 coding upstream 138126 24050406 ~ 24063207 (-)
G13424 NA non-coding downstream 95021 23814277 ~ 23816058 (-)
G13369 NA non-coding downstream 383139 23527690 ~ 23527940 (-)
G13361 NA non-coding downstream 404781 23506020 ~ 23506298 (-)
G12917 NA non-coding downstream 779581 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 972283 22938226 ~ 22938796 (-)
G13452 NA non-coding upstream 109250 24021530 ~ 24021918 (-)
G13465 LOC108266188 non-coding upstream 129974 24042254 ~ 24042606 (-)
G13467 NA non-coding upstream 131164 24043444 ~ 24043657 (-)
G13468 NA non-coding upstream 135823 24048103 ~ 24049660 (-)
G13693 NA non-coding upstream 204710 24116990 ~ 24120764 (-)
dedd1 dedd2 other downstream 236600 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 383756 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 745495 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 781766 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 1002939 22901351 ~ 22908140 (-)
LOC113542286 riiad1 other upstream 230319 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 324012 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 479250 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 623580 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 640018 24552298 ~ 24561375 (-)

Expression


Co-expression Network