LOC113542286 (riiad1)


Basic Information

Item Value
gene id LOC113542286
gene name riiad1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24142599 ~ 24149267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16274
CCTGGCTGCCCGCTGCAggtgtgtgagaggagaagcGGGGAGTAATGGCGGACCGAGGCCTGGAGAAAGCCGACATCGCTGCACTCAGCCCTGAACAGCAGGAACAGTTGCGCCAGTTTAAGATCAAGACAAGAATAGCGAATGAAAAGTATCTGAGAGCTCATCCAGAAGTGGAAATGCTGCTGAGTGATTTTCTAAGAGATGTGTTTGTTAAAAGACCTACAGATATCCGTGAATTTGCTGCAGatcatTTCAGTGATCCAGACCTACCAAGGAAAATTCAGATGAAATTGGAAGAGAAGGCTTCAGTGAAAATATGAAGAGGTCTTAAAATATATGTCccataaaacaatgaaaacacaTTACTTTTATTTAGCATGATAGCATTTGCTACTTGGAGCTATTATGTAATAGGGTTTTATCAGGGGAGAAGACTCTGGCTCTTTTGTTAAATGAGACTATGGGGATGTAAAAACTATGGAGATGAATGTCAACTCCACTGAACTGAACAAAATACCACAATCAAGTGTTACATCAAGTCACATCCGCTGGATAGGAGAGGGCACAAATTCTAAAagcatttttctttctattaaaACATTATCCCACTATTTTGAACAAGTGCTATCATCAATCTGAGATGTTATTGTCTAAACACAGTTAGGCATAAATTTGTAACAGTCTGGAATACAGAAAGTGCATACCTTCATCTCCATGGTTTTTGAAATACGTTGTTAAGATACACTTTTTCCACATAAACGTGAATGGCAAAAGTTACCATATGGTTTGCTAATATCATATATGAGATCAGAATTTTCCATGCGGAATTACTGGCACCCcataaatgagcaaaaatgcataaataaatagaaaataagtgatattttgaacTACagggtcatttatttattttcaaattccAAACACAACTTTTTTTAAGTAGTGTAACTACAAAATACAGATTTCAAAAgtactattaatattttatgatgccTACCTTGGAGAGAATAACAACACAGAATCAATTTCTATAAAGGTTTACGGACTTGAAATACCCGATTACTTAGCAGAATTCGTGATGCCATAAATCTGGTACAAAACAGCTCCAAAGTATCAATTACTCGCCACCATATTTGACACTCAGTGCCAGTTGTAGTTCTgatgacacttgaaatttaggtgctgtatttttgtgagATGCGATGCTTCTAAACAGCTTGTTGTGAAAGTGGAGTTTAACAGCTGATTTTGAAATTTGACAACCACAAGAGTCATCTAAACTGTGTAATTCTAAAACTATGATCTTTGGGCATTTTACCCCTCCTTTCATCTCTCGCTCATGGGTTAAATTCCTGGCAAATTTCCAACTGCTTCTACTTCTTGTTATGGTCCTAATTCTTCACAATGGTATTTTTAACCggttatgtatttttatatccattacctgatTTGTCAAGGTCAACAAATGTCGAAATGCTTTGTGTTTTCCCCATGGTAATGGAAGACagtggaattttacatgtgtgcaacctcatattttTACCCCAGTGAAACAGGACATGGTTAAAGGAAACAATTGAAACAAAAGTTACTGGGAACTGTGAgcaaattagttttttttccccaagaatgttaatttgtttgtattcatttaaaatgctcCATaggagtgccaataattttggctcatttgtttttgag
>XM_026939689.2
TTGTCTTGTCGCCTAGCAACCCGTCCGCTTCAGCCTGGCTGCCCGCTGCAggtgtgtgagaggagaagcGGGGAGTAATGGCGGACCGAGGCCTGGAGAAAGCCGACATCGCTGCACTCAGCCCTGAACAGCAGGAACAGTTGCGCCAGTTTAAGATCAAGACAAGAATAGCGAATGAAAAGTATCTGAGAGCTCATCCAGAAGTGGAAATGCTGCTGAGTGATTTTCTAAGAGATGTGTTTGTTAAAAGACCTACAGATATCCGTGAATTTGCTGCAGatcatTTCAGTGATCCAGACCTACCAAGGAAAATTCAGATGAAATTGGAAGAGAAGGCTTCAGTGAAAATATGAAGAGGTCTTAAAATATATGTCccataaaacaatgaaaacacaTTACTTTTATTTAGCATGATAGCATTTGCTACTTGGAGCTATTATGTAATAGGGTTTTATCAGGGGAGAAGACTCTGGCTCTTTTGTTAAATGAGACTATGGGGATGTAAAAACTATGGAGATGAATGTCAACTCCACTGAACTGAACAAAATACCACAATCAAGTGTTACATCAAGTCACATCCGCTGGATAGGAGAGGGCACAAATTCTAAAagcatttttctttctattaaaACATTATCCCACTATTTTGAACAAGTGCTATCATCAATCTGAGATGTTATTGTCTAAACACAGTTAGGCATAAATTTGTAACAGTCTGGAATACAGAAAGTGCATACCTTCATCTCCATGGTTTTTGAAATACGTTGTTAAGATACACTTTTTCCACATAAACGTGAATGGCAAAAGTTACCATATGGTTTGCTAATATCATATATGAGATCAGAATTTTCCATGCGGAATTACTGGCACCCcataaatgagcaaaaatgcataaataaatagaaaataagtgatattttgaacTACagggtcatttatttattttcaaattccAAACACAACTTTTTTTAAGTAGTGTAACTACAAAATACAGATTTCAAAAgtactattaatattttatgatgccTACCTTGGAGAGAATAACAACACAGAATCAATTTCTATAAAGGTTTACGGACTTGAAATACCCGATTACTTAGCAGAATTCGTGATGCCATAAATCTGGTACAAAACAGCTCCAAAGTATCAATTACTCGCCACCATATTTGACACTCAGTGCCAGTTGTAGTTCTgatgacacttgaaatttaggtgctgtatttttgtgagATGCGATGCTTCTAAACAGCTTGTTGTGAAAGTGGAGTTTAACAGCTGATTTTGAAATTTGACAACCACAAGAGTCATCTAAACTGTGTAATTCTAAAACTATGATCTTTGGGCATTTTACCCCTCCTTTCATCTCTCGCTCATGGGTTAAATTCCTGGCAAATTTCCAACTGCTTCTACTTCTTGTTATGGTCCTAATTCTTCACAATGGTATTTTTAACCggttatgtatttttatatccattacctgatTTGTCAAGGTCAACAAATGTCGAAATGCTTTGTGTTTTCCCCATGGTAATGGAAGACagtggaattttacatgtgtgcaacctcatattttTACCCCAGTGAAACAGGACATGGTTAAAGGAAACAATTGAAACAAAAGTTACTGGGAACTGTGAgcaaattagttttttttccccaagaatgttaatttgtttgtattcatttaaaatgctcCATaggagtgccaataattttggctcatttgtttttgagagaaaatactattatttgAAAATTCTAAGGAGAATGTCTTCTTtagaataaagaagaaaaatagttCTCCTATTGGTTGAATagaaaatttttaattattgtatgtcattaatattttatacaatcatttttatgaaaggtgccaataattctggagggcactaCATGTAACTTTCACTCATCTTTCTGTATGAATACAGTTTAATAAAGATGGTATACgtcaataaatgaaatatagtaCCA

Function

symbol description
riiad1 Orthologous to human RIIAD1 (regulatory subunit of type II PKA R-subunit domain containing 1).

NR:

description
RIIa domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16274 False 1701 lncRNA 0.36 4 24142842 24149234
XM_026939689.2 True 1977 mRNA 0.35 4 24142599 24149267

Neighbor

gene id symbol gene type direction distance location
otoa LOC108266121 coding downstream 3439 24120864 ~ 24139160 (-)
setdb1b setdb1,setdb1b,LOC107573682,LOC107717459 coding downstream 39430 24082850 ~ 24103169 (-)
trim108 trim39 coding downstream 67328 24070643 ~ 24075271 (-)
si:ch73-86n18.1 LOC108266148 coding downstream 72932 24064724 ~ 24069667 (-)
cops7a cops7a,LOC108432301,LOC107717457 coding downstream 79392 24050406 ~ 24063207 (-)
LOC117599236 NA coding upstream 122576 24271843 ~ 24285542 (-)
LOC113542498 LOC108266011 coding upstream 145294 24294561 ~ 24311366 (-)
LOC117599025 LOC108266000 coding upstream 170039 24319306 ~ 24331967 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding upstream 183352 24332619 ~ 24374787 (-)
aqp10a LOC108265981,LOC108429989 coding upstream 226654 24375921 ~ 24385223 (-)
G13693 NA non-coding downstream 21835 24116990 ~ 24120764 (-)
G13468 NA non-coding downstream 92939 24048103 ~ 24049660 (-)
G13467 NA non-coding downstream 98942 24043444 ~ 24043657 (-)
G13465 LOC108266188 non-coding downstream 99993 24042254 ~ 24042606 (-)
G13452 NA non-coding downstream 120681 24021530 ~ 24021918 (-)
G13703 NA non-coding upstream 2438 24151705 ~ 24152851 (-)
LOC113542360 NA non-coding upstream 39488 24188755 ~ 24198379 (-)
G13725 NA non-coding upstream 74999 24224266 ~ 24227769 (-)
G13752 NA non-coding upstream 117387 24266654 ~ 24269804 (-)
G13748 NA non-coding upstream 168415 24317682 ~ 24318420 (-)
dedd1 dedd2 other downstream 468120 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 615276 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 977015 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 1013286 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 1234459 22901351 ~ 22908140 (-)
LOC117596842 NA other upstream 87025 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 242263 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 386593 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 403031 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 412233 24561500 ~ 24578247 (-)

Expression


Co-expression Network