G13725


Basic Information

Item Value
gene id G13725
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24224266 ~ 24227769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16303
ctcaaagcagctttacagaacataagaaacaaaaagcatgcaaacagaaagaaaaacatgcaaacaatcctagatgttagacagaattatccctagtgagcaagcctgaggcgactgaggcgaagaagaagaaaaatccaaacaaaaacaatagagttccagcacctttggtgcttggacccctaactagcatacaaaaacatgtaaaaagaaATTGTTACTAATAGTTTTAATTACAAGCTTTAATAAATGACCATTTTTAATCTGCATGATAGTCCTAGGTAAAGAATTGCCACCTTTAAAGTGAAGTACAAACCTCAACATATTCAAAATTCAGCTGCTGGAATCCTTACTCGTAACAAATATTCAGCACACATTACACCTATACTGCAAAAGCTACACTTGCTCACCATTTCACAGAGAATCAAAtacaaactctttttttttctcacatacAAAGCAATTCATGACATCTGTCTGCCTTATATCTCTGAGCTCCTACATTCCTACAGCCAAGATCAGCTTCTCGGGTCACAGGAACACCAGGCTCTGTCACCAACAGTCAGTGCCCGCTCTCCCCAGTGTACTAACCAGTACCACCTGTCCCCATTCACCACACTCATTAGCACTCTATACAAGCACACACCTCACATTCACACTTTGTCTGGCCTTAACTAGGAATAGACCTCTTATCTGTGAGTGGTATCTGTGAAAAACTCCTTATGGTCCTAACGGCTCCCTATGGTTTCTCCAGCGATTCTCCTTCAGGACACATGAGGTGTGTGCTCCTTTCCctcattcatttgtttagtGACTCCACCAGTGTTATCCACCAGCCTGCAGTAATTATCTTTGTGTTTACTGTCTTTGCATACCTGTTGTTTTTGCCAAATCCTCTAATAAATTTGTGCTGGGCTCTTACCTTTTGTCTCAGAGTCTGATCTGTCCTGATAGGCATAGATTATTAAATGTTAGATATTGTACTATGTCTATAAGTGTGCACACAAACTGTGCTGTGAAGGGAGTCACAGCAGACCATGCTCGGAGTGAAGTACTAACATATCCCTCTAGCATAATAAGTGTCTCAGGTACATATTGGAATACAGGTTGAATCCAGATTCAACATATCATAACtgtgaagattttttttgtagagtGGAAAGGTTAATCATTATTGATATTTCCATGCAGTTATGAATCAACAATGAAAATACcctttggtttgtttttacACTGATTTGCATTTTCCAGCACAATGTGATCAGAATGTAAAAGGTTAACATTCCTGTGCACTAGGAAGTAAATTAGGCTCACTTATAACACATAAGAACTTATTAATCCCTCATGGGGAAATGAAAGTGTTACAGCAGATCAATGGTAAGAATATAATGTGTGaggaaaataatgtaaagtCCTTAAAAATGCTCTGCAGATTCCAAAGGATCTGTCTTCTCAGCGCATACAGTTGGCCCCTTCTGTATCTGCATCAATGTTATCTGAACTCCTATGTAATTGTTAAGTAGGTCAAACTATacaagaggtgtgtgtgtgagggggagaGGGATGATTTGACCTTTTGAAAGTCCAATATCAGCTCCTTGGTTTTACTCAAATTGGGCTGAAAGCACAATGTTGACAGCACTTCATAAAGTCCTTTTACCAGTCTCTTGTATTTTCCTTTGCATTCCACTAGTAATACAATAACAATGCTGATACTGTTTTTAATGGATGGAATATCTTCTTTATGGATTATTATATTCTTTTGCTGTATGTGcatataaaacacaatacaccacattttaagtcatatttacaCCCCATACACTAATCTACATGTTAACaacaaaaatgttacataaccTTTGCATGTTACGTACTcttaaacacacctgattctGTTTGCCCCCAAGGTGACTTTTACGTTCCTAAGTACGTTTTACGTTCCTGAATGTGGTTTTGTTGCTTTAATCATGTAAATAGAAGACATTGTTTGAGTGGCAGAATATTGTAATGATTTCCTTATGAATAGGCAAATGTTTCACTTTGAAAACCTCAGTTTCAAATTTACTAGTTTCCATTGATGAAATGACAAAGTATGAATTTAAAGGACCGCAAAGAGCATGTATATGCTCAAGCATCTCCCCCTTTTCCCTGCAATTGCAATGAAGCCCTATTTGGCAAGGCTTTTTTATGATAAACGGCTGCCATTCATAAGCTGAAGGATGAATTTGCTGGTATGCGGGGGTTtgtaactttgtgtgtgtgtccagtgttgAGAATAAGTCAGTACTGAAGAGAGGACTGAAGACTGAGTAAAATCTAAAAAGAACAGTAACATACGTGTCATATATGTGTCATAACAGTAACGGTGTCATATCCTCCCCCTCTTGAGGATATGACAGTCTTCAGTCCTCTCTTCAGTACTGAATGCAATGTAAAAGGAAGGCAATATAGTAATGTTTTCACAGAAAGTTGTTAACACAGTGACTGTTGCTTTTTTACAAGTTGAATAACCCCAATGCTGGTGCTCTACACAGGTAATATTACCTAGATAGCAAGCTAAAAACAATTTGTGACAGGCTTTAAAAGAAAGGCAagtacctgatttttttttttcagttggtAGAAGGGGGcttgacaggaaaaaaaactgcGAACCAATGAATAGCCATAAGAATTTAGTATATTATGTCATGACAAATAATGTCACTCTGACATTAGCCACTCCTCCTGGTTGCACAAACATAGTGGTAGTCTTTAGTGGTTTTTAAGAGCAAGctagaatttgttttctaaaatgtgtGTTGGTTGTCAAAATTAGAAAGGTGGCCATGAACATATTCATTTTTACCACATACTGTAGAACTGGACACCCTTTCAAGCCAACAGTAGATAAATGTGGTTACAAGCAATTAGGAGGTATAACTGGTCCAGTGAGCTCCATCTTTTCAGTGCCCAAAGGGAGGTACAACCCCTTTCACAAAGCAAACATCAGTCAACTTCCAACTTGTATTTTCCTCTGTCTTTGTTGACGAATGATTAATACCTTGTGTGAATGACTAATACCTTGTGTGCTGTGATAAAGTGAGAGATTCAGATTAACTCTAAGTGACCAACTGGGCCAGATGGGATTCTAGGCATATAAGTGCACTGTTAACCTAAAGATAAGTTAGCACATGACACTCAGGCTCATCCAGAGGCTCCCAGGGAACTTTTGTATATCATTTTGAGCAGGGACAACTGTGAAGATCAAGCAACCTGCCCCTTTGAGGAAAAAGGTAACCCTTCTGAGAACACATACCATCCACATCTGTCaaataatagattaaaaaaaaaaaacctgggaTGGAGATAGCAGTTACTTTCTAAAAAACAGGTGAACAATGATAATGGATTAATATATCAGTACTACTAGGGCCAACGCAGAAGTCCACACAGAAGGTAAAAGTACAACTGTAACCCACAGATCCTTCAAAAAGcttcagaaatgtgtttgtctttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16303 True 3504 lncRNA 0.38 1 24224266 24227769

Neighbor

gene id symbol gene type direction distance location
otoa LOC108266121 coding downstream 85106 24120864 ~ 24139160 (-)
setdb1b setdb1,setdb1b,LOC107573682,LOC107717459 coding downstream 121097 24082850 ~ 24103169 (-)
trim108 trim39 coding downstream 148995 24070643 ~ 24075271 (-)
si:ch73-86n18.1 LOC108266148 coding downstream 154599 24064724 ~ 24069667 (-)
cops7a cops7a,LOC108432301,LOC107717457 coding downstream 161059 24050406 ~ 24063207 (-)
LOC117599236 NA coding upstream 44074 24271843 ~ 24285542 (-)
LOC113542498 LOC108266011 coding upstream 66792 24294561 ~ 24311366 (-)
LOC117599025 LOC108266000 coding upstream 91537 24319306 ~ 24331967 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding upstream 104850 24332619 ~ 24374787 (-)
aqp10a LOC108265981,LOC108429989 coding upstream 148152 24375921 ~ 24385223 (-)
LOC113542360 NA non-coding downstream 25887 24188755 ~ 24198379 (-)
G13703 NA non-coding downstream 71415 24151705 ~ 24152851 (-)
G13693 NA non-coding downstream 103502 24116990 ~ 24120764 (-)
G13468 NA non-coding downstream 174606 24048103 ~ 24049660 (-)
G13467 NA non-coding downstream 180609 24043444 ~ 24043657 (-)
G13752 NA non-coding upstream 38885 24266654 ~ 24269804 (-)
G13748 NA non-coding upstream 89913 24317682 ~ 24318420 (-)
G13782 NA non-coding upstream 159520 24387289 ~ 24388003 (-)
G13783 NA non-coding upstream 162742 24390511 ~ 24391404 (-)
G13780 NA non-coding upstream 212877 24440646 ~ 24696017 (-)
LOC113542286 riiad1 other downstream 74999 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 549787 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 696943 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 1058682 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 1094953 23120472 ~ 23129313 (-)
LOC117596842 NA other upstream 8523 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 163761 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 308091 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 324529 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 333731 24561500 ~ 24578247 (-)

Expression


Co-expression Network