LOC117596842


Basic Information

Item Value
gene id LOC117596842
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24236292 ~ 24240079 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16308
caGTGATTATGTTCAAAAACATTCAGATAGACTAATCTGTGTGTAGTTTTCATTGAGATACAGCCTAATTTCCCACTTGCTGTAATGTGATCTTATTTTCATGCCTGTATTAGAGCTATATGTGGTCTGAAACAGATGTCCATCTTGGGATAAACATGGACCAAATCAGACAGACTAAACAAAGCCCAATTTTCAGTGACTATCTGTGGGCTAAATAAAGGCCATGACACTGATGTGAACGCAGAAGTGTGGGAGCTGGACAACTTCCAAATATATTACATAGTGGATATCACCCAGGATCCATTAGAAGGAAGTGTTCAATCATTACCCGTAAATCATTACTGTATTTCACTTTTCATATTCGTAATAGtcaatgtaaacatttaaacctaAAGATGTTTTCGTCATTTCTTAGTGTAATTCTGTAGATGTATCCAAGATTGGCACCACAAGTGGCCTGCTGACACTTCCTGAGGAAAAGGCCCCTACAATCCTTAGAGAACATGAAGAGGCAAAGAGACTATTTCCTCACGGAAGCTGCTTGTTAAAGTCGCTGTCAGAGACCTTGTAGAGAAACATGGGTTTAACAGAAAAGCTGGCACTAGCAAAGGAGATTGTGTCATTGTTCCCCTTATTAAGGATTAAAGTCCCATTTGGCGAAAATAAGGGACATATGAGCTGTGCTACACTATGTTAAATATCCTCATTCATCTGCATCTGGGAGAAGTGTTGCCAGCAGTAAATGCTGTGTGAAATCTGCTGTCTCATACCTGTTGGAGTTGGTGACAGCTGGTACCAGCATGACCTCCTTGCTCAGTGAATCTATGAAAGGGTCTCTGAAGTCAACTCAGCCGCAGTTAGTTTCCATCAGTTCTCTAGGACATGGAGCCCGCAGGGCTTGTTGCTGCAGGCTCACTTGGAGAAGTTGTTGAAGTGTGGCTTCCATCATGCTGCTTCAGCAGCAGTCCTACCAGATCCATGCCGATCCTCTCGAAGGGGACGCCAATAATGGGGAGAGGGATGAGCGGCGCGGGAGCAGGCTTATAGGGGGTCGTCCTCTGGCACTGTGGGCACTGCTGGCAGAAGTCCCAGACCTCGGCGTCCATCCCGGGCGAGGTGAATCGGTCCTTCATTTTCTCGGGGAGCCCCAGGTGCCCCCCCCAGTGGGTGCGCATGGGCTAGGTGCAGAAGGGCCTGGGTGCGGCTGCGTGGCACTACCAGCAGTTCGCTGGGCTGGTTTCGGCGCTCCGTCTTGAGGTACAGCAGGCCTCCTCGCACCAGGAACTAGGAGGTTGGCAGCTGCTGGTCGGGCTGCTGGTGTACGCCTTCAATGAACCGCACCTGAGCCCAGCAGTTCTTCAGTCTAGCATCCTCCTTCTGCTCCTGGCCGAAATTTCCCTCTCGAGCGACCTGCGAATATACAGAGGACACAGGATTAGTCGGGGGGAGGGGCTCACCTGCTGAGGTCGCTCCGGCGTCTCCTTCGTCCTGGGCGAGGCATGCTGGCCAGACCCTTGCTCGCCTCTGGGATGAGGCCCACCTCGCTGCTTCTTCCCCACTCCTTAGCCTGGTGGCCCACGGAGACATGGGCTGCAGGGACCTCCCTGGCATCCCCATGTACACAGGAGACCGTCAGTCGGCATGGATGCCTTTTGGAGCTTCCCATAAGCGGAGCGGCTGGGTCTTCCCTCCCCTTGGGTGTGCAGATCTAAGCGTCTCGTCGGAGAGGGTCGGGGAAAGTCACATCGGTCGCCCCTGCCGATCTCCAGAGTAGCCACCGCTCGCTCCAGAGCCTCCAGCATTTCCCTGGGGGTGCAGGCTCCCCTTCCTTTCTTCGGGCGGCAGAGCTCGGGTTCCCCTTCCTTTCTTCAGGCGGCAGAGCTCGGAGGAACCGATCCATAGATGGCTGGAGCCACCGCTTGGCAATCCGCAGCAGGGCTTGTTGCTGCAGGCTCTTAGAGAACGGGGCGGTTGTCGCGCAGAGTGTGAGACTCGTCTTCTCCACTTACGTCTCCGTctgcaaaaagaacaaaattagCGGGAAACCCTCAGTTTCCTCTGTGAGGGTAGATTTTGGCTGCTGCTTTTATTGGCTGCCAGACACGCTGCAGAAAAGACTCATACTTGACTAAAGAAAATGGCTGTTTCTTTTGACAGTACTGAAGTCCAAACATTTATGAAAGATTTTGACAGTCCTAGAAATATGATTTGTGATATACCATTTAAACTAACAAAGTACTTTTCTGACAAATTTTCCTTTGAGAAGCCAGCAGAAGTGTTTCTTGGTCACAGATTAGATAGAGTTAGAAAGaatgggtaaaaaaaacaacaaggtgTTAGTGCCAGTCACATTTCAGTACATCTTgataattaatacaaataaaattcctATTTAGCGGTGACAACATGCAACATATGTATATAAAGTCTTGTGGTGGAAATGCTAAAATACAAGATTATTGTGATGGTGTTCATTATGCTAGACACCCTCTATACCAAAACCACCCCAATACATTACAAATTCaatttggaaatttggaaaCAACAAATACTTTCTCTGCAAACAGATTCTGTCAATTTTCTTTGACAAACCAAGTGAAAACTATGCATACCATGTACAGCTTAATGATGCAAGTGCAACTGGTGTCAAGCATAACTCTTGCCTGACTAGCAAACAGTATTTTCATGTAACTGAAAATATTGGCATGGACATCATGCATGATGTGTTAGAGCCAGTTGCACCTCTTGAGGTCAAATTGATGCTGAGACATTTCATTTATGAGAAGAGAAGgttttagaatatttaaatgtttttataaagacTAATGACTTTTTATAATGTATGATGAATGCTTTGAAGTGCTTGTTTGACAGTTTTATAGTCAGCAAGCATACTATAATGTAAAAACAGCTGAATGAACAACAAATAAGAACACAAACAGT
>XR_004577825.1
TGTGTGTAGTTTTCATTGAGATACAGCCTAATTTCCCACTTGCTGTAATGTGATCTTATTTTCATGCCTGTATTAGAGCTATATGTGGTCTGAAACAGATGTCCATCTTGGGATAAACATGGACCAAATCAGACAGACTAAACAAAGCCCAATTTTCAGTGACTATCTGTGGGCTAAATAAAGGCCATGACACTGATGTGAACGCAGAAGTGTGGGAGCTGGACAACTTCCAAATATATTACATAGTGGATATCACCCAGGATCCATTAGAAGGAAGTGTTCAATCATTACCCGTAAATCATTACTGTATTTCACTTTTCATATTCGTAATAGtcaatgtaaacatttaaacctaAAGATGTTTTCGTCATTTCTTAGTGTAATTCTGTAGATGTATCCAAGATTGGCACCACAAGTGGCCTGCTGACACTTCCTGAGGAAAAGGCCCCTACAATCCTTAGAGAACATGAAGAGGCAAAGAGACTATTTCCTCACGGAAGCTGCTTGTTAAAGTCGCTGTCAGAGACCTTGTAGAGAAACATGGGTTGTGAGTATATGGTTGTTTAACAGCTGTAAAGTGTAATTTTCGCACTCATAAGTTTTATAAACACTGTCCAATAACGCAGtctaacatttttttgtgtcattattTGTGATCTAACCATTTCTACAACTTTCTGCTTTTATtgaacttatttttttaaactatccAGTAACAGAAAAGCTGGCACTAGCAAAGGAGATTGTGTCATTGTTCCCCTTATTAAGGATTAAAGTCCCATTTGGCGAAAATAAGGGACATATGAGCTGTGCTACACTATGTTAAATATCCTCATTCATCTGCATCTGGGAGAAGTGTTGCCAGCAGTAAATGCTGTGTGAAATCTGCTGTCTCATACCTGTTGGAGTTGGTGACAGCTGGTACCAGCATGACCTCCTTGCTCAGTGAATCTATGAAAGGGTCTCTGAAGTCAACTCAGCCGCAGTTAGTTTCCATCAGTTCTCTAGGACATGGAGCCCGtATATATATAGCAGGGCTTGTTGCTGCAGGCTCACTTGGAGAAGTTGTTGAAGTGTGGCTTCCATCATGCTGCTTCAGCAGCAGTCCTACCAGATCCATGCCGATCCTCTCGAAGGGGACGCCAATAATGGGGAGAGGGATGAGCGGCGCGGGAGCAGGCTTATAGGGGGTCGTCCTCTGGCACTGTGGGCACTGCTGGCAGAAGTCCCAGACCTCGGCGTCCATCCCGGGCGAGGTGAATCGGTCCTTCATTTTCTCGGGGAGCCCCAGGTGCCCCCCCCAGTGGGTGCGCATGGGCTAGGTGCAGAAGGGCCTGGGTGCGGCTGCGTGGCACTACCAGCAGTTCGCTGGGCTGGTTTCGGCGCTCCGTCTTGAGGTACAGCAGGCCTCCTCGCACCAGGAACTAGGAGGTTGGCAGCTGCTGGTCGGGCTGCTGGTGTACGCCTTCAATGAACCGCACCTGAGCCCAGCAGTTCTTCAGTCTAGCATCCTCCTTCTGCTCCTGGCCGAAATTTCCCTCTCGAGCGACCTGCGAATATACAGAGGACACAGGATTAGTCGGGGGGAGGGGCTCACCTGCTGAGGTCGCTCCGGCGTCTCCTTCGTCCTGGGCGAGGCATGCTGGCCAGACCCTTGCTCGCCTCTGGGATGAGGCCCACCTCGCTGCTTCTTCCCCACTCCTTAGCCTGGTGGCCCACGGAGACATGGGCTGCAGGGACCTCCCTGGCATCCCCATGTACACAGGAGACCGTCAGTCGGCATGGATGCCTTTTGGAGCTTCCCATAAGCGGAGCGGCTGGGTCTTCCCTCCCCTTGGGTGTGCAGATCTAAGCGTCTCGTCGGAGAGGGTCGGGGAAAGTCACATCGGTCGCCCCTGCCGATCTCCAGAGTAGCCACCGCTCGCTCCAGAGCCTCCAGCATTTCCCTGGGGGTGCAGGCTCCCCTTCCTTTCTTCGGGCGGCAGAGCTCGGGTTCCCCTTCCTTTCTTCAGGCGGCAGAGCTCGGAGGAACCGATCCATAGATGGCTGGAGCCACCGCTTGGCAATCCGCAGCAGGGCTTGTTGCTGCAGGCTCACTTGGAGAAGTTGTTGAAGTGTGGCTTCCATCATGCTGCTAGGTGCTGTGTTAATGCCCGCAACCTCCACCACTGTGACGTGCGAGATCATAGGAGGGCTGAACACAAGCACCCAGAggcagaaatgtgcaaaatgtgctctttattttctaaGTGGAGGTCGGGGAAAAGTGGAGAACGGAGTGGTGAAAGGTGGCGTGAAGGTGGCTGCTGCTCGCTCGCCGCGCCACACGCCGGGACGGAGGATGCACGGCGGGCGCTCTTAGAGAACGGGGCGGTTGTCGCGCAGAGTGTGAGACTCGTCTTCTCCACTTACGTCTCCGTctgcaaa
>XR_004577826.1
TGTGTGTAGTTTTCATTGAGATACAGCCTAATTTCCCACTTGCTGTAATGTGATCTTATTTTCATGCCTGTATTAGAGCTATATGTGGTCTGAAACAGATGTCCATCTTGGGATAAACATGGACCAAATCAGACAGACTAAACAAAGCCCAATTTTCAGTGACTATCTGTGGGCTAAATAAAGGCCATGACACTGATGTGAACGCAGAAGTGTGGGAGCTGGACAACTTCCAAATATATTACATAGTGGATATCACCCAGGATCCATTAGAAGGAAGTGTTCAATCATTACCCGTAAATCATTACTGTATTTCACTTTTCATATTCGTAATAGtcaatgtaaacatttaaacctaAAGATGTTTTCGTCATTTCTTAGTGTAATTCTGTAGATGTATCCAAGATTGGCACCACAAGTGGCCTGCTGACACTTCCTGAGGAAAAGGCCCCTACAATCCTTAGAGAACATGAAGAGGCAAAGAGACTATTTCCTCACGGAAGCTGCTTGTTAAAGTCGCTGTCAGAGACCTTGTAGAGAAACATGGGTTGTGAGTATATGGTTGTTTAACAGCTGTAAAGTGTAATTTTCGCACTCATAAGTTTTATAAACACTGTCCAATAACGCAGtctaacatttttttgtgtcattattTGTGATCTAACCATTTCTACAACTTTCTGCTTTTATtgaacttatttttttaaactatccAGTAACAGAAAAGCTGGCACTAGCAAAGGAGATTGTGTCATTGTTCCCCTTATTAAGGATTAAAGTCCCATTTGGCGAAAATAAGGGACATATGAGCTGTGCTACACTATGTTAAATATCCTCATTCATCTGCATCTGGGAGAAGTGTTGCCAGCAGTAAATGCTGTGTGAAATCTGCTGTCTCATACCTGTTGGAGTTGGTGACAGCTGGTACCAGCATGACCTCCTTGCTCAGTGAATCTATGAAAGGGTCTCTGAAGTCAACTCAGCCGCAGTTAGTTTCCATCAGTTCTCTAGGACATGGAGCCCGCAGGGCTTGTTGCTGCAGGCTCACTTGGAGAAGTTGTTGAAGTGTGGCTTCCATCATGCTGCTTCAGCAGCAGTCCTACCAGATCCATGCCGATCCTCTCGAAGGGGACGCCAATAATGGGGAGAGGGATGAGCGGCGCGGGAGCAGGCTTATAGGGGGTCGTCCTCTGGCACTGTGGGCACTGCTGGCAGAAGTCCCAGACCTCGGCGTCCATCCCGGGCGAGGTGAATCGGTCCTTCATTTTCTCGGGGAGCCCCAGGTGCCCCCCCCAGTGGGTGCGCATGGGCTAGGTGCAGAAGGGCCTGGGTGCGGCTGCGTGGCACTACCAGCAGTTCGCTGGGCTGGTTTCGGCGCTCCGTCTTGAGGTACAGCAGGCCTCCTCGCACCAGGAACTAGGAGGTTGGCAGCTGCTGGTCGGGCTGCTGGTGTACGCCTTCAATGAACCGCACCTGAGCCCAGCAGTTCTTCAGTCTAGCATCCTCCTTCTGCTCCTGGCCGAAATTTCCCTCTCGAGCGACCTGCGAATATACAGAGGACACAGGATTAGTCGGGGGGAGGGGCTCACCTGCTGAGGTCGCTCCGGCGTCTCCTTCGTCCTGGGCGAGGCATGCTGGCCAGACCCTTGCTCGCCTCTGGGATGAGGCCCACCTCGCTGCTTCTTCCCCACTCCTTAGCCTGGTGGCCCACGGAGACATGGGCTGCAGGGACCTCCCTGGCATCCCCATGTACACAGGAGACCGTCAGTCGGCATGGATGCCTTTTGGAGCTTCCCATAAGCGGAGCGGCTGGGTCTTCCCTCCCCTTGGGTGTGCAGATCTAAGCGTCTCGTCGGAGAGGGTCGGGGAAAGTCACATCGGTCGCCCCTGCCGATCTCCAGAGTAGCCACCGCTCGCTCCAGAGCCTCCAGCATTTCCCTGGGGGTGCAGGCTCCCCTTCCTTTCTTCGGGCGGCAGAGCTCGGGTTCCCCTTCCTTTCTTCAGGCGGCAGAGCTCGGAGGAACCGATCCATAGATGGCTGGAGCCACCGCTTGGCAATCCGCAGCAGGGCTTGTTGCTGCAGGCTCACTTGGAGAAGTTGTTGAAGTGTGGCTTCCATCATGCTGCTAGGTGCTGTGTTAATGCCCGCAACCTCCACCACTGTGACGTGCGAGATCATAGGAGGGCTGAACACAAGCACCCAGAggcagaaatgtgcaaaatgtgctctttattttctaaGTGGAGGTCGGGGAAAAGTGGAGAACGGAGTGGTGAAAGGTGGCGTGAAGGTGGCTGCTGCTCGCTCGCCGCGCCACACGCCGGGACGGAGGATGCACGGCGGGCGCTCTTAGAGAACGGGGCGGTTGTCGCGCAGAGTGTGAGACTCGTCTTCTCCACTTACGTCTCCGTctgcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16308 True 2943 TUCP 0.47 6 24236292 24240079
XR_004577825.1 False 2427 lncRNA 0.52 4 24237211 24240042
XR_004577826.1 False 2416 lncRNA 0.52 4 24237211 24240042

Neighbor

gene id symbol gene type direction distance location
otoa LOC108266121 coding downstream 97132 24120864 ~ 24139160 (-)
setdb1b setdb1,setdb1b,LOC107573682,LOC107717459 coding downstream 133123 24082850 ~ 24103169 (-)
trim108 trim39 coding downstream 161021 24070643 ~ 24075271 (-)
si:ch73-86n18.1 LOC108266148 coding downstream 166625 24064724 ~ 24069667 (-)
cops7a cops7a,LOC108432301,LOC107717457 coding downstream 173085 24050406 ~ 24063207 (-)
LOC117599236 NA coding upstream 31764 24271843 ~ 24285542 (-)
LOC113542498 LOC108266011 coding upstream 54482 24294561 ~ 24311366 (-)
LOC117599025 LOC108266000 coding upstream 79227 24319306 ~ 24331967 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding upstream 92540 24332619 ~ 24374787 (-)
aqp10a LOC108265981,LOC108429989 coding upstream 135842 24375921 ~ 24385223 (-)
G13725 NA non-coding downstream 8523 24224266 ~ 24227769 (-)
LOC113542360 NA non-coding downstream 37913 24188755 ~ 24198379 (-)
G13703 NA non-coding downstream 83441 24151705 ~ 24152851 (-)
G13693 NA non-coding downstream 115528 24116990 ~ 24120764 (-)
G13468 NA non-coding downstream 186632 24048103 ~ 24049660 (-)
G13752 NA non-coding upstream 26575 24266654 ~ 24269804 (-)
G13748 NA non-coding upstream 77603 24317682 ~ 24318420 (-)
G13782 NA non-coding upstream 147210 24387289 ~ 24388003 (-)
G13783 NA non-coding upstream 150432 24390511 ~ 24391404 (-)
G13780 NA non-coding upstream 200567 24440646 ~ 24696017 (-)
LOC113542286 riiad1 other downstream 87025 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 561813 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 708969 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 1070708 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 1106979 23120472 ~ 23129313 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 151451 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 295781 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 312219 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 321421 24561500 ~ 24578247 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 1021961 25262040 ~ 25266771 (-)

Expression


Co-expression Network