Gene
RNA
| Item | Value |
|---|---|
| gene id | G13748 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 24317682 ~ 24318420 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU16340 | True | 739 | lncRNA | 0.42 | 1 | 24317682 | 24318420 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113542498 | LOC108266011 | coding | downstream | 6316 | 24294561 ~ 24311366 (-) |
| LOC117599236 | NA | coding | downstream | 32140 | 24271843 ~ 24285542 (-) |
| otoa | LOC108266121 | coding | downstream | 178522 | 24120864 ~ 24139160 (-) |
| setdb1b | setdb1,setdb1b,LOC107573682,LOC107717459 | coding | downstream | 214513 | 24082850 ~ 24103169 (-) |
| trim108 | trim39 | coding | downstream | 242411 | 24070643 ~ 24075271 (-) |
| LOC117599025 | LOC108266000 | coding | upstream | 886 | 24319306 ~ 24331967 (-) |
| atp8b2 | atp8b2,LOC107677029,LOC107714674 | coding | upstream | 14199 | 24332619 ~ 24374787 (-) |
| aqp10a | LOC108265981,LOC108429989 | coding | upstream | 57501 | 24375921 ~ 24385223 (-) |
| tuft1a | LOC108265940 | coding | upstream | 101061 | 24419481 ~ 24432966 (-) |
| LOC113542274 | cgn | coding | upstream | 123967 | 24442387 ~ 24475208 (-) |
| G13752 | NA | non-coding | downstream | 47878 | 24266654 ~ 24269804 (-) |
| G13725 | NA | non-coding | downstream | 89913 | 24224266 ~ 24227769 (-) |
| LOC113542360 | NA | non-coding | downstream | 119303 | 24188755 ~ 24198379 (-) |
| G13703 | NA | non-coding | downstream | 164831 | 24151705 ~ 24152851 (-) |
| G13693 | NA | non-coding | downstream | 196918 | 24116990 ~ 24120764 (-) |
| G13782 | NA | non-coding | upstream | 68869 | 24387289 ~ 24388003 (-) |
| G13783 | NA | non-coding | upstream | 72091 | 24390511 ~ 24391404 (-) |
| G13780 | NA | non-coding | upstream | 122226 | 24440646 ~ 24696017 (-) |
| G13819 | NA | non-coding | upstream | 295833 | 24614253 ~ 24619949 (-) |
| G13834 | NA | non-coding | upstream | 395569 | 24713989 ~ 24718852 (-) |
| LOC117596842 | NA | other | downstream | 77603 | 24236292 ~ 24240079 (-) |
| LOC113542286 | riiad1 | other | downstream | 168415 | 24142599 ~ 24149267 (-) |
| dedd1 | dedd2 | other | downstream | 643203 | 23659523 ~ 23674479 (-) |
| cicb | cic,LOC107582035 | other | downstream | 790359 | 23477158 ~ 23527323 (-) |
| cxcr3.2 | LOC108266514 | other | downstream | 1152098 | 23132926 ~ 23165584 (-) |
| si:dkey-92i15.4 | LOC108265956,LOC108429986 | other | upstream | 73110 | 24391530 ~ 24404530 (-) |
| si:ch211-105c13.3 | LOC108265907 | other | upstream | 217440 | 24535860 ~ 24546841 (-) |
| LOC113542209 | LOC108265814 | other | upstream | 233878 | 24552298 ~ 24561375 (-) |
| pbxip1b | pbxip1 | other | upstream | 243080 | 24561500 ~ 24578247 (-) |
| rps27.2 | rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 | other | upstream | 943620 | 25262040 ~ 25266771 (-) |
