G13752


Basic Information

Item Value
gene id G13752
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24266654 ~ 24269804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16344
ttaaagaaaatgttccaTACTTGTGCATAAGGTCCACAAGCTTTGTgagaatacattttaatacaaaaatcCCTTTAAGATGTACAGCAGCAAGCATTCAGAAGCCACACTACCACATTAGCCACATCCCCCCAACAGCGGGGATTACCGTGCCCAAGAGGAAGGATTATAGCCATGTCTTACATTGCTTACAAGTACTTGTTGCTACACCAAAAAACTATTACTGACAATAAACCATTAATTTACACCAttgtcataaaatattaaatggtgTTAGTTATTGTACTACTTCTATAAATGCACATACAAACAGTGTGCTGTGAAGGGTCTAATTTCCTtatatactgaataatatgctcaAACCTGACCTTGACTCTATCAGAGTATGCTCAGAGTAAGACAAGCAGGCAGCAGCACATAAAGTCCAAATATTTCCATTAGCATGAAAAGTGTGTCAGGTATATAGTCACATACAGGATGAATTCAAATTCAACTTGTATTATCATAACTATGAAGAAAAtaccacacttttttttttatttgtcacatatacattatagtaTAGTGAACTTCTATTCTTCACACTACCACTCTCTTTTCCTATTTATTGTGTAGTTTACCAACCCTCATAAGATATATCATATATTACTTATTAACATcattaatacatatataaatatttatgtgtaAAATGGTGAGCACCCCCCACATTGTGGGCCAggccaccaaaaaaaaagtggtaaaaCTAGCAGTGGTGTAGATCATTCTTCATAGCACCAATAACCCCACAGCACCAGCCACCAATTCAGAGTCACTGGtagaggatgaagatgaagctgtgaagaaagaggaagagacacAAGCTACAGGTTATGTTCGCAGTGATGTTAACTGCCTCATGCTTTGACAAAAACTAGGCTAGCAagcatattacatttttttctattgtacTGTATCTTTTTTGTTCTATTTGACATTGACTCATTGCTTAGGCCATGCAAGTTGTGATACAGGTCTTATAGTTTTGAGGTAGCACCAGTCAATGAGACAAATGCCAGGGTTGAATGAATTTTTGCCCCAGTCAGCCCCTGCGTCAGCTACTGTTAAATTATAATAGATTTCTACAAAGTAAATAACAGTATTACCCACTCATCAATCAAGTAGATAAAGAGGAGATTAAGTTAGTATTGTTGTATGGCTCTTTTGTTGTATAAGATCTTAACTCTAGTTgcctaaaatataaattattggTATTGAATACATTTAGGCAGATAAAGATATGTGGCTTTTGCTTTTTGTCTCAGAGgctgttgtttattaataattccTAGACACACATTTAAGGAGGTAAAAAGAAGGCGTGAATATGACTTAGATTCTAAAAAAGATGAGTGATTACAAGACAATGCAGCAGTAAATGTGCCGTAGTGTATAAGGAAGATATGGGTCAAATTCACTCATTTACTTCTGAGTATTGCAAATAACAAAGACAGTCTCAGAATGTGTAATTAGTATTGCTGTATGACTCTACAGCTCTTAATTATAGTTGCCTAAAATCTCAGTTAGATTAGATTCTAAtctaattagattagattctaATAAAAGATTCtaataaaaacaagacaatgcAGCAGTAAATGTGGGGTAGTGTATAAGGAAGACATGGGTCAAATTCAGTTATTTCTTCTCAAGTATTGCAAATGTGTGATGCTTTTGAAATCTTTTAgtaggaagaaaaaaactggGCAGTAACGTTTCCTCTCAAGCTGCATATCAAAACCTGTCATAGCAGTAGTTCAAGTCTCAGGCTGCTTTCACAAGCAATAGAGGAAGTCATGTGTTAATCCAAAACCCCCAAGAGTAAGTATCTACTTTGAGTGTGTatgtctgagagagaaagagggctTTGGCGATGGCAGAAGAGTcaccaaagaaaaaacaaagtaatGAAATATACTGCATGATATACACTTGGCATTGGGAACACATTGTCTTGGTAGCTCATCATGTCTGCTGTAGCAAGAGGTTGTCCACCACTTTGCTCTGAGGCTGTTTCTAATGATTTAACCTTCAGTTTAAGATAATACAAGCTGAGATTAAGAATTATTCATTCCAGTGGGAAATTTCTTGCCAACACTTGCTCTATAtaggtatatatacacagaagAAACCGAAAATTACTACAAAACAGCAGAATGTGTAGAAAGTATAAAAATAGccctggaaaagaaaaaaaaaagaacaaacagtataaaataaataaaataaaaagtaaattaattaagataaagtaaaataaaaaataaaataaaacactatatatGGAATATAGTGATATTACCCTAGTTCTAAagtgaccagaataaagtgacTGAATCCAAAGTGACAAGTTACAAGAGTAAAAGTGAccagtgaaataaaagtgcagAGTGGACCTCCAAGTTACTGGATTATGAGTTTACCAGTTACACTTAGTTTTCTCATACAGAGCTACAGATGATCGTATTGGTGTGGGCCCACACATGTTCTCTAAGTGTGTAACTGGCAACCCCCTCACTTAGTCAAGGTCAGAAAGAGACACTCGTGACTTTTAAGGCTTgtaacatttttctcttttctagcATTCCACATCAATAAATCCTCCCCTGATTTGGGTAATGTAGCTAACTTTTGGTATACTGTCTGTAACCAGTTATTTGGATTTAATTACTGTCCATGTCTCATATAACACAGAGAAACTGTCTGCACAAAAGTTCAGCTACCCTACATATTGAtggttttcattttcaaattgaCACAAGGTCTCTAAGAGCTTCTTGTAACATTGTGCTTGTTTaaaatcccattccaaagttgcCCCCTTGccgctataacagcctccactcttctgggaagggttaCCATTACATCTTGGattgtggctgtgggaatttcccATTCAGCCccatgagcattagtgaggctTGACACTGATGTCAGATGAGACGGCCGGACGTACAGTCGGCatttcaattcatcccaaaggtgttcagtggggttgaggtcagggcttcctgcactccaaccttggcaaacaaTGTCTACATGGAGcgcgctttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16344 True 3100 lncRNA 0.35 2 24266654 24269804

Neighbor

gene id symbol gene type direction distance location
otoa LOC108266121 coding downstream 127494 24120864 ~ 24139160 (-)
setdb1b setdb1,setdb1b,LOC107573682,LOC107717459 coding downstream 163485 24082850 ~ 24103169 (-)
trim108 trim39 coding downstream 191383 24070643 ~ 24075271 (-)
si:ch73-86n18.1 LOC108266148 coding downstream 196987 24064724 ~ 24069667 (-)
cops7a cops7a,LOC108432301,LOC107717457 coding downstream 203447 24050406 ~ 24063207 (-)
LOC117599236 NA coding upstream 2039 24271843 ~ 24285542 (-)
LOC113542498 LOC108266011 coding upstream 24757 24294561 ~ 24311366 (-)
LOC117599025 LOC108266000 coding upstream 49502 24319306 ~ 24331967 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding upstream 62815 24332619 ~ 24374787 (-)
aqp10a LOC108265981,LOC108429989 coding upstream 106117 24375921 ~ 24385223 (-)
G13725 NA non-coding downstream 38885 24224266 ~ 24227769 (-)
LOC113542360 NA non-coding downstream 68275 24188755 ~ 24198379 (-)
G13703 NA non-coding downstream 113803 24151705 ~ 24152851 (-)
G13693 NA non-coding downstream 145890 24116990 ~ 24120764 (-)
G13468 NA non-coding downstream 216994 24048103 ~ 24049660 (-)
G13748 NA non-coding upstream 47878 24317682 ~ 24318420 (-)
G13782 NA non-coding upstream 117485 24387289 ~ 24388003 (-)
G13783 NA non-coding upstream 120707 24390511 ~ 24391404 (-)
G13780 NA non-coding upstream 170842 24440646 ~ 24696017 (-)
G13819 NA non-coding upstream 344449 24614253 ~ 24619949 (-)
LOC117596842 NA other downstream 26575 24236292 ~ 24240079 (-)
LOC113542286 riiad1 other downstream 117387 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 592175 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 739331 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 1101070 23132926 ~ 23165584 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 121726 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 266056 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 282494 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 291696 24561500 ~ 24578247 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 992236 25262040 ~ 25266771 (-)

Expression


Co-expression Network