G13780


Basic Information

Item Value
gene id G13780
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24440646 ~ 24696017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16374
atattgttttattagaTCTATTTACACCATTGAAtcaaagaataagaaaaatctgtgtaattatgtatttttgtagaaatAGTGTCTTATTCCACTTGACCAATCAGTGATAATCAAGTAAAAgcatttttatgatgtaatgtgAAGGAGATGTTTGACCTCTCTATGTACAGTCTTGTTGCTGAAACACATAATGGTACATCCTGAAGCTTTTAAATGCCCATTAAATCTATgactttgtatttttacatatatttttatgaaaaataaataaaccataagcatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16374 True 286 lncRNA 0.27 2 24440646 24696017

Neighbor

gene id symbol gene type direction distance location
tuft1a LOC108265940 coding downstream 7680 24419481 ~ 24432966 (-)
aqp10a LOC108265981,LOC108429989 coding downstream 55423 24375921 ~ 24385223 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding downstream 65859 24332619 ~ 24374787 (-)
LOC117599025 LOC108266000 coding downstream 108679 24319306 ~ 24331967 (-)
LOC113542498 LOC108266011 coding downstream 129280 24294561 ~ 24311366 (-)
si:dkey-246i14.3 LOC108269281 coding upstream 74259 24770276 ~ 24807929 (-)
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding upstream 339388 25035405 ~ 25052980 (-)
osgin2 osgin2 coding upstream 622269 25318286 ~ 25333708 (-)
LOC113545493 NA coding upstream 639584 25335601 ~ 25336609 (-)
rps19 rps19,LOC107657656,LOC100689943 coding upstream 825472 25521489 ~ 25527931 (-)
G13783 NA non-coding downstream 49242 24390511 ~ 24391404 (-)
G13782 NA non-coding downstream 52643 24387289 ~ 24388003 (-)
G13748 NA non-coding downstream 122226 24317682 ~ 24318420 (-)
G13752 NA non-coding downstream 170842 24266654 ~ 24269804 (-)
G13725 NA non-coding downstream 212877 24224266 ~ 24227769 (-)
G13834 NA non-coding upstream 17972 24713989 ~ 24718852 (-)
G14303 NA non-coding upstream 367451 25063468 ~ 25065486 (-)
G14315 NA non-coding upstream 403385 25099402 ~ 25101229 (-)
G14333 NA non-coding upstream 449824 25145841 ~ 25148263 (-)
G14435 LOC108266725,LOC108257096,LOC108266736,LOC108266743,LOC108280559,LOC108429918,LOC108429917 non-coding upstream 654402 25350419 ~ 25377539 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 36116 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 200567 24236292 ~ 24240079 (-)
LOC113542286 riiad1 other downstream 291379 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 766167 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 913323 23477158 ~ 23527323 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 566023 25262040 ~ 25266771 (-)
bcam bcam other upstream 699470 25395487 ~ 25487425 (-)
G14258 NA other upstream 704739 25400756 ~ 25404306 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 851017 25547034 ~ 25705515 (-)
fxyd7 LOC108429921,LOC103043934 other upstream 1062038 25758055 ~ 25764694 (-)

Expression


Co-expression Network