Gene
RNA
| Item | Value |
|---|---|
| gene id | G13782 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 24387289 ~ 24388003 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU16376 | True | 715 | lncRNA | 0.53 | 1 | 24387289 | 24388003 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| aqp10a | LOC108265981,LOC108429989 | coding | downstream | 2066 | 24375921 ~ 24385223 (-) |
| atp8b2 | atp8b2,LOC107677029,LOC107714674 | coding | downstream | 12502 | 24332619 ~ 24374787 (-) |
| LOC117599025 | LOC108266000 | coding | downstream | 55322 | 24319306 ~ 24331967 (-) |
| LOC113542498 | LOC108266011 | coding | downstream | 75923 | 24294561 ~ 24311366 (-) |
| LOC117599236 | NA | coding | downstream | 101747 | 24271843 ~ 24285542 (-) |
| tuft1a | LOC108265940 | coding | upstream | 31478 | 24419481 ~ 24432966 (-) |
| LOC113542274 | cgn | coding | upstream | 54384 | 24442387 ~ 24475208 (-) |
| s100t | LOC108265897,LOC107594934,LOC107714712,LOC107673706,LOC108441953 | coding | upstream | 144768 | 24532771 ~ 24534495 (-) |
| LOC113542308 | NA | coding | upstream | 159261 | 24547264 ~ 24550488 (-) |
| lenep | NA | coding | upstream | 194498 | 24582501 ~ 24583824 (-) |
| G13748 | NA | non-coding | downstream | 68869 | 24317682 ~ 24318420 (-) |
| G13752 | NA | non-coding | downstream | 117485 | 24266654 ~ 24269804 (-) |
| G13725 | NA | non-coding | downstream | 159520 | 24224266 ~ 24227769 (-) |
| LOC113542360 | NA | non-coding | downstream | 188910 | 24188755 ~ 24198379 (-) |
| G13703 | NA | non-coding | downstream | 234438 | 24151705 ~ 24152851 (-) |
| G13783 | NA | non-coding | upstream | 2508 | 24390511 ~ 24391404 (-) |
| G13780 | NA | non-coding | upstream | 52643 | 24440646 ~ 24696017 (-) |
| G13819 | NA | non-coding | upstream | 226250 | 24614253 ~ 24619949 (-) |
| G13834 | NA | non-coding | upstream | 325986 | 24713989 ~ 24718852 (-) |
| G14303 | NA | non-coding | upstream | 675465 | 25063468 ~ 25065486 (-) |
| LOC117596842 | NA | other | downstream | 147210 | 24236292 ~ 24240079 (-) |
| LOC113542286 | riiad1 | other | downstream | 238022 | 24142599 ~ 24149267 (-) |
| dedd1 | dedd2 | other | downstream | 712810 | 23659523 ~ 23674479 (-) |
| cicb | cic,LOC107582035 | other | downstream | 859966 | 23477158 ~ 23527323 (-) |
| cxcr3.2 | LOC108266514 | other | downstream | 1221705 | 23132926 ~ 23165584 (-) |
| si:dkey-92i15.4 | LOC108265956,LOC108429986 | other | upstream | 3527 | 24391530 ~ 24404530 (-) |
| si:ch211-105c13.3 | LOC108265907 | other | upstream | 147857 | 24535860 ~ 24546841 (-) |
| LOC113542209 | LOC108265814 | other | upstream | 164295 | 24552298 ~ 24561375 (-) |
| pbxip1b | pbxip1 | other | upstream | 173497 | 24561500 ~ 24578247 (-) |
| rps27.2 | rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 | other | upstream | 874037 | 25262040 ~ 25266771 (-) |
