G13783


Basic Information

Item Value
gene id G13783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24390511 ~ 24391404 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16377
ctcattgGTTATCAGCAGGGTTGTATAAAGTATCCAATAGCCATATATGAGCAAAAGTAAAGATACTTTGACTCTAATTCATCCCCAGATCTCtctaaagctgatttttttaaccatttgatTTTTACAGAATGTCTAATATTCGatggtgcaaaatattttttattgtgacacacttaaacaaaaaatctgacatttgtTGAGTTCTTAAGTATTGATCACCCTAGGTCAAACCTCCTTTTgatgcaattacagctgcaagttTTTTCAAGTTTTGTTACAGATTCTCAGATGGAtatggattgagatctgggacATTCTAATCCAGTGTAGCTTTGGCCATATACTTAGGGtaattgtcctgttggaagatGAACCTCTGCTCCAGTTTCAAGTCCCTGGATCAAGACTGGAACAGGTGTTCTGCTAGGATTGtcctgtatttggctccatccgtCTTGGCCTCAACCCTGTTTCCCAGtctctgctgatgaaaagcttTTGCACAtgatgatgctaccaccaccatgcttcactgttgggATGGTATTATCAGGATGATGAGCAATGTTTGGTTTCCACCAAATGTAGTGCTTTGTGTtaaggccaaaaagttcaattttggtctcatcaaacCAAAGAACATTTTTCACGTTTGCTGAGTTTCCAACAGCATTTTGGCAACCTCCAAAAGAAATTTCATATGAATTCGTTctcttccataaagcccagcttGATCGTCCTGTGAACAGCTTTttccatctgagctgtggatttCTCCAACTTTTTCAGCGTTACTTTTGGCCTCTCACTTGCTTTTCTCAGTAATGCCCTACTTACCCAATCACAATCTTTTGGTGAAGGGCCTCCTCTAAACAAAATcacagttgtgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16377 True 894 lncRNA 0.53 1 24390511 24391404

Neighbor

gene id symbol gene type direction distance location
aqp10a LOC108265981,LOC108429989 coding downstream 5288 24375921 ~ 24385223 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding downstream 15724 24332619 ~ 24374787 (-)
LOC117599025 LOC108266000 coding downstream 58544 24319306 ~ 24331967 (-)
LOC113542498 LOC108266011 coding downstream 79145 24294561 ~ 24311366 (-)
LOC117599236 NA coding downstream 104969 24271843 ~ 24285542 (-)
tuft1a LOC108265940 coding upstream 28077 24419481 ~ 24432966 (-)
LOC113542274 cgn coding upstream 50983 24442387 ~ 24475208 (-)
s100t LOC108265897,LOC107594934,LOC107714712,LOC107673706,LOC108441953 coding upstream 141367 24532771 ~ 24534495 (-)
LOC113542308 NA coding upstream 155860 24547264 ~ 24550488 (-)
lenep NA coding upstream 191097 24582501 ~ 24583824 (-)
G13782 NA non-coding downstream 2508 24387289 ~ 24388003 (-)
G13748 NA non-coding downstream 72091 24317682 ~ 24318420 (-)
G13752 NA non-coding downstream 120707 24266654 ~ 24269804 (-)
G13725 NA non-coding downstream 162742 24224266 ~ 24227769 (-)
LOC113542360 NA non-coding downstream 192132 24188755 ~ 24198379 (-)
G13780 NA non-coding upstream 49242 24440646 ~ 24696017 (-)
G13819 NA non-coding upstream 222849 24614253 ~ 24619949 (-)
G13834 NA non-coding upstream 322585 24713989 ~ 24718852 (-)
G14303 NA non-coding upstream 672064 25063468 ~ 25065486 (-)
G14315 NA non-coding upstream 707998 25099402 ~ 25101229 (-)
LOC117596842 NA other downstream 150432 24236292 ~ 24240079 (-)
LOC113542286 riiad1 other downstream 241244 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 716032 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 863188 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 1224927 23132926 ~ 23165584 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 126 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 144456 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 160894 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 170096 24561500 ~ 24578247 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 870636 25262040 ~ 25266771 (-)

Expression


Co-expression Network