si:ch211-105c13.3 (LOC108265907)


Basic Information

Item Value
gene id si:ch211-105c13.3
gene name LOC108265907
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24535860 ~ 24546841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16407
CTCTGAATGCGCACACGCCCagttatttaatgaaaaaaacactTGGAAAGACTTTGGGATTCACGAAAGAGCCACTTAAGGGCGTTGTACACACTCCTAGGCAGAGAAAAGCAGCACTACGAAACTTCAGCTTACAGAATCAGCAAGATGGAGTCAGCTATCAAGACTGTGGTTGGGCAGTTCGTGAGTTCGGCCCGTGGCAAAGAGAGTCTCAACAAGGACAATTTCCAAAAACTGGTCCAGCGTCAACTGGGGAACATCATGGCTGACACAGACAGCTCATCGGCAGTAAAGGATATGATGCGGGGCCTGGACGAGAACCAGGATGGGAAGGTCAGCTTCCAGGAGTACATGACCCTGATTGGCTACTTGGCCAACTCACTGAGCGAAAGTAAAACCAAAACTCAGACAGCCACCAACTAAGACCTCAACACTCAACAGCTGACCGACTTCGCCATTGTGTACTCCAATATTGCTATAAACCTGGCAAAGCAAGCCCACTGTGTATGCCCACaatattttttatgctttttttttttacacagctgCCTAAGTCAGTACTGACATATCTACAATAATTACTAACACATTGTCCTGTGGAGAGTAAATGTTATCCAGTGTTAATTTACTACCTGCTATATGCCGAAATGATgtacactgctctcagccatcATTCACAGTCCTATGAGAAATGCAGCATAGCTGGACTGAGCACTGATGCTACAATGACCTTAAATATTGTTTTGTACTTTGGAGATATTGCATGGAAATAAAAAGGTCAAAAATCAAATTGTTTCACTCTGCTCAGTCAACTGTCTGAAATGTGGAACCagagaaaaagaacattttttaagaTGATCTTTTCGGTGCAAATTATTAAATACTAGAAAATTAACcctgacaaaatacaaaaaaatatataagaattTTCCAAATGATTGATATTATGCTTCTTCAGGAGCAAATTATACTAGCATAAGGACATGGAATATCCTTCATACCCTCCTGTTATTCagctttaaatgaaaattgGGATTAGTTTATTGACA
>XM_026939726.2
CCTGCTCTGAATGCGCACACGCCCagttatttaatgaaaaaaacactTGGAAAGACTTTGGGATTCACGAAAGAGCCACTTAAGGGCGTTGTACACACTCCTAGGCAGAGAAAAGCAGCACTACGAAACTTCAGCTTACAGAATCAGCAAGATGGAGTCAGCTATCAAGACTGTGGTTGGGCAGTTCGTGAGTTCGGCCCGTGGCAAAGAGAGTCTCAACAAGGACAATTTCCAAAAACTGGTCCAGCGTCAACTGGGGAACATCATGGCTGACACAGACAGCTCATCGGCAGTAAAGGATATGATGCGGGGCCTGGACGAGAACCAGGATGGGAAGGTCAGCTTCCAGGAGTACATGACCCTGATTGGCTACTTGGCCAACTCACTGAGCGAAAGTAAAACCAAAACTCAGACAGCCACCAACTAAGACCTCAACACTCAACAGCTGACCGACTTCGCCATTGTGTACTCCAATATTGCTATAAACCTGGCAAAGCAAGCCCACTGTGTATGCCCACaatattttttatgctttttttttttacacagctgCCTAAGTCAGTACTGACATATCTACAATAATTACTAACACATTGTCCTGTGGAGAGTAAATGTTATCCAGTGTTAATTTACTACCTGCTATATGCCGAAATGATgtacactgctctcagccatcATTCACAGTCCTATGAGAAATGCAGCATAGCTGGACTGAGCACTGATGCTACAATGACCTTAAATATTGTTTTGTACTTTGGAGATATTGCATGGAAATAAAAAGGTCAAAAATCAAA

Function

NR:

description
PREDICTED: protein S100-A16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16407 True 1049 TUCP 0.40 3 24535860 24546837
XM_026939726.2 False 794 mRNA 0.44 3 24536119 24546841

Neighbor

gene id symbol gene type direction distance location
s100t LOC108265897,LOC107594934,LOC107714712,LOC107673706,LOC108441953 coding downstream 1365 24532771 ~ 24534495 (-)
LOC113542274 cgn coding downstream 60652 24442387 ~ 24475208 (-)
tuft1a LOC108265940 coding downstream 102894 24419481 ~ 24432966 (-)
aqp10a LOC108265981,LOC108429989 coding downstream 150637 24375921 ~ 24385223 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding downstream 161073 24332619 ~ 24374787 (-)
LOC113542308 NA coding upstream 423 24547264 ~ 24550488 (-)
lenep NA coding upstream 35660 24582501 ~ 24583824 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding upstream 38112 24584953 ~ 24622217 (-)
si:dkey-246i14.3 LOC108269281 coding upstream 223435 24770276 ~ 24807929 (-)
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding upstream 488564 25035405 ~ 25052980 (-)
G13783 NA non-coding downstream 144456 24390511 ~ 24391404 (-)
G13782 NA non-coding downstream 147857 24387289 ~ 24388003 (-)
G13748 NA non-coding downstream 217440 24317682 ~ 24318420 (-)
G13752 NA non-coding downstream 266056 24266654 ~ 24269804 (-)
G13725 NA non-coding downstream 308091 24224266 ~ 24227769 (-)
G13819 NA non-coding upstream 67412 24614253 ~ 24619949 (-)
G13834 NA non-coding upstream 167148 24713989 ~ 24718852 (-)
G14303 NA non-coding upstream 516627 25063468 ~ 25065486 (-)
G14315 NA non-coding upstream 552561 25099402 ~ 25101229 (-)
G14333 NA non-coding upstream 599000 25145841 ~ 25148263 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 131330 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 295781 24236292 ~ 24240079 (-)
LOC113542286 riiad1 other downstream 386593 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 861381 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 1008537 23477158 ~ 23527323 (-)
LOC113542209 LOC108265814 other upstream 5457 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 14659 24561500 ~ 24578247 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 715199 25262040 ~ 25266771 (-)
bcam bcam other upstream 848646 25395487 ~ 25487425 (-)
G14258 NA other upstream 853915 25400756 ~ 25404306 (-)

Expression


Co-expression Network