LOC113542209 (LOC108265814)


Basic Information

Item Value
gene id LOC113542209
gene name LOC108265814
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24552298 ~ 24561375 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16416
aaatgaTGTTACCATTTAGTAAGTCATTAGTAGAAAATGACCCTTTGCAAGGCAGTAATATTTGCAAAGGATTCTTGAAAAGCAGAATCATTCAGGCCTGTAATAATTTAAGCACAAACAAAGTAAATTGTAAGTttgtaaaaaatatcatttacacCACTTAATAAAAAAGCTGTGTAACTTTTCATAGCTTGGCCAAGCTGGTGAAATCACGCACATATCTGGACTGGCCACAGGAAGAGGGGGAGAGGATACACTTCTGGGAACGTCTGAGAAGAAACATTGCTGAAGTGGAGATGgaTGCTCCGTGAAAACAACATGTACCACCATGTACCATGTACCAAATGTTGTGAAGACAACATTTAGATTTGGATGGTGTATGCAACAAATGATGAAAATAGTCTAAATGTTTGTATACACAAAATCGTAGAACAATGCAAAGCTAATTGTCAAAAATTATTTGTGTTGTCCACTTTAAATttccagcttattattcagttattcatttgaAAGCATGTTATTCAGTATTTATCATTAAGCATATATGATATATTCAGTAACAAAAAGGGGTTTAATTTACACTGATtacattttcaattcattttttttcagaaacttctgTGTAATTTGTCTTCTttgtaatttgttaataaaactTTAACCATGCACCATAATGATTAGATGAAGCACTGACTAATTTTCATAAATAAGGAATTTGAATAATTATGAGTATATATAAGAATTCTAAACAAATATGAACATTTAAGCTAGCATTACTAGATGACCAAATAAATGCTTGTAGCTAAAACAACAGCACCAGATACAGTTCAAAACTTCATTTTGGGaatgttaaacacacatttaacaaataTCAAGCAGAAAAAAGCTACAACTATATTAATTCAATGCAATTCAAATCACTTTTCTACTTGCATGATTATTAGACTCACCAGTAAAAGTTTGGCTTTAAATAGGTTAGTTTTGTAGATAATCACCAGAGCGAAAGAATAACCTGAGGACAGTTCATGAAGAAATAAACTCTTCACAACGCTCTGTACAGAATTCACTTAGAACtggaatttaataaaaattgcatGTGAGAAGATCTACCAAGGCTGTACATGCCTCTACACAAATGTAGTTTTTCAGGATTTCTTACTTCCTTTCATCAGTTTGTTATTTCTGTTATATCtattaatgtttttcatttgctgTTATTTGCTGAGCTGGGAATATTTGTATGCataaatatattgaataaagAGTGGATTAAAACTTGTCACTTAATAGAAACCTTCTCTGTTTTTAATGACTTCATTAatcactcatctgctacacaaTAGTAAATATGATGTTGAACCCTGCTAGTTTTCTCTaagtttttatttccatttccaaAGTATTGACATGTTTTCAGTTCTGCTTTTTGTGGCTATGAAACTTCATAAATACCTCACCATAAAACTGCTATATCCACCCTCTTTATAAGGTAG
>XM_026939568.2
TAGTACCATAAACCTCTCAGTCCAAGTGTATTTCTTCTCACCACTATTATTGTACTCTTGAGTTTATTAAGTTGCTGCATGGGTGCTACACTAACACAGTGTATGTCCTTCCTCAAATGCAGTCTACATGATGTAAATAAAactcaagtgaaaaaaaaaaaagaatccacCCAATCCTCGGTGGCTTTATATAAGTGAAGTGTTCAGTCTGAAATTTAATGCAACCACAAGGATGAAATACTGctctgattaaaaaagaaaataggaaAACTGTTTGGCTCAAAATATGGGTATGTATAAACAAGCAACTGTGTCTTCATCTCTGCATCTCTGCTTGAGATTCAGTCTATATTTCAGTATGTCTAGTGTTGTCACTGCTCTTATTAGTAAGCGCTGCATGACTTTTGATGAGAATCTCCTCAGTGACATTGGAACGTTTTGCCATCATCAGCCTGGGTTTGGTCCCTATGGCGAATGCAAAATCTTAGACTTCCAAAAGGATCTCTTGGAGATTGAGGCAGGAATCAGATCTCTTTGCATTTACAGTGATGATACAGTCATTCCAGCCAGTGCTTTCTCACACCTTACAACCTTGGAACGTCTGCAAATACGTGGATATAATCTCAGGAGGGTTCACTCTGGTGCCTTTTCCGGCCTTTTCAACCTTAAATATCTGCGTATTATTTTCAGTTCCTCTGATTGCAGCAATGTTGAATTGGATACTCCTGTGTTTGCTGGATTGCATCATCTAGAGGAAATATCCTTAAAAGGATTTCAATTGTCTAACATTCCCAATACCACATTTGAGCATCTGGTTAGTTTAGTTAAACTGTCTCTGGACACCATTTGTGTGGAGGAACTTGTTGAGGTTTTATGCTATGTCCCAAATGAAATGTCCCGCTTAAAATACTTAGAGGTGAGTAACAGTGGCATCACTTCCATCAGAAACAGAAGCTGTCCATCATGGCCTTCAGCTGTACTTGCAGGAATACAGGTTTTAGATCTTAGTCAAAACTCTGTTAAAATAATTGAGGCCAGCTCTCTGGCAGTGTTTCAGAACCTTTCAAGTCTCTCTCTAGGTTTTTGTGGTCTAAGGCTGGGAGAAATTTGGGAATCTGGAGTTGGAAAAGTGagcaatgttgttttttctggaACTATATTAGAAAAATATTCTACAAACTGCAAAGACATGTGCCAGCTAGTTTCTAACTTGAATCTTCACTCTCTCGAGCTATCCTATGTACTCTTAGATTCACTGTCAATGGAAGATTTAAAAGATTGTGGAAAAGATCTTACAGTGCTTGGTATATATAATTCAAAAGTCCAGCTGCTGGACCCAGCATTCTGGAGAAGCATAGCAGGAATACAGGCAATGCATTTGGTCAGCATGGCATTGACTGAAGCCTCATTCTGTGTTGCTGCCAATGGGACTCTTTGGAATGTAACTACTCTGAATCTAATGAATAACCAGCTAACAGTAGTCAAAACACACCAGTTTGTTTGCACCCCTCTACTCGAGCAGCTTCTACTTAATGAAAACGCAATTACGACTCTAGAACCCGAAGCATTCAGTGGTCTTCGTCATCTTAAGATTCTCAAACTTAACTCAAACAAGATCAAAATGCTTGCTGCGAATGACTTTCAGTCTCTTCGATCTCTAGAAGTTCTGCGTATTGATGAAAATGTGATTGAGAACATTGAGGATGGGACATTTAGAAACCAGAAGGAGCTTCGTGAACTTGCATTTGGAAGGTTGGAGTATATCTATACATTACATCTGAACATGTTGTTTTATGGTCTTCCCAAGGACATACAGTATCTCAGCATTGATGCATATGTCGGGACTACACTTCTTTTGGGAAATATTGGAAGACCCAAAGGAAGCTTCAGATTTGATCTAAATGGATTTGAGCTCAAAATTGGAGAGAACTATCCTCCCTTTCTGGAATCTGTCCGAGAGCTTAAGCTGACTGGACACACGTTTTTTATTAAGAACGACTTCTTTGTTCCTTATTTTTCTCATCTAGAATCTTTAGAGTTTTCAGGTGATCCTGAAAGGGTGTTCATCAATTACACAGGAATCAGCAATTTGCATTACCTCAAGCGTCTCAAACTCGTCAATCTTAATTTCTCAAACCACACCAATCCTGGTATGACCTTCTGGAATCTAAAACAGCTACAGATCCTTGTACTCTATAACTgccatctgaatttcctgacaAAGATGATGTTCAGGGATCTGCACTCACTGGAGCTGTTGCATCTCTACAGTGTCAAACCACTAATCCTACAGGATGGGATGTTTGATACCTTGCCAGTTCTGAGAGCTGTGGTGCTTGACAGAGTGGACTTTCGATGTGACTGTGAGACTGCCTGGTTCCTAGAATGGGCACAGAGCACACGAGCACAGGTGATCaatctgcagcagcagcagtgtgtctgGCATTATCAGAAACTGAATTTATTGTCCACCATGGAAAAGTTATGTCAGACAGATGTGCAGTACCTGTGCTATTTGGGCACTGTCAACATCATAAGTCTGCTGCTGTTAAGTGCTCTTAGCTATCGCTTTGCATACTGGCCTTGTGTTGTCTTCATCTTCCGACTCAGAGGTTATATAGAGAGACAGTTCGGTAAAGGTTGGCGGAGGAGAAGGCAAAGGCGCAGAGGGGATGGACTAGAAGCCGAAGAAGACATGAAATATGATGCATTTGTGTCATTCAGTAGCCGTGATGAAGCTTGGGTCTTGGGGGAGTTGGCTCCAAGGTTAGAGGAACAAGGCCAACCCAGGCTCCGACTCTGCTTGCACAGCAGAGACTTTGAGgTGGGAAAGGGAATTGTCGATAACATTGCAGAGAGTATTTACAGTAGCCGGCGCACGGTGTGTGTGCTTAGTCGCCAGTATCTGCGAAGTGACTGGTGCAGCCTGGAGATGCGAGTAGCAACACACCGGCTGCTGGAAGAACAGAAACATCGTCTCATTCTCATCTTTCTCGAGCACATCTCCCCATTTGAGCTCAATACTTTTCACCGCTTGGCCAAGCTGGTGAAATCACGCACATATCTGGACTGGCCACAGGAAGAGGGGGAGAGGATACACTTCTGGGAACGTCTGAGAAGAAACATTGCTGAAGTGGAGATGgaTGCTCCGTGAAAACAACATGTACCACCATGTACCATGTACCAAATGTTGTGAAGACAACATTTAGATTTGGATGGTGTATGCAACAAATGATGAAAATAGTCTAAATGTTTGTATACACAAAATCGTAGAACAATGCAAAGCTAATTGTCAAAAATTATTTGTGTTGTCCACTTTAAATttccagcttattattcagttattcatttgaAAGCATGTTATTCAGTATTTATCATTAAGCATATATGATATATTCAGTAACAAAAAGGGGTTTAATTTACACTGATtacattttcaattcattttttttcagaaacttctgTGTAATTTGTCTTCTttgtaatttgttaataaaactTTAACCATGCACCATAATGATTAGATGAAGCACTGACTAATTTTCATAAATAAGGAATTTGAATAATTATGAGTATATATAAGAATTCTAAACAAATATGAACATTTAAGCTAGCATTACTAGATGACCAAATAAATGCTTGTAGCTAAAACAACAGCACCAGATACAGTTCAAAACTTCATTTTGGGaatgttaaacacacatttaacaaataTCAAGCAGAAAAAAGCTACAACTATATTAATTCAATGCAATTCAAATCACTTTTCTACTTGCATGATTATTAGACTCACCAGTAAAAGTTTGGCTTTAAATAGGTTAGTTTTGTAGATAATCACCAGAGCGAAAGAATAACCTGAGGACAGTTCATGAAGAAATAAACTCTTCACAACGCTCTGTACAGAATTCACTTAGAACtggaatttaataaaaattgcatGTGAGAAGATCTACCAAGGCTGTACATGCCTCTACACAAATGTAGTTTTTCAGGATTTCTTACTTCCTTTCATCAGTTTGTTATTTCTGTTATATCtattaatgtttttcatttgctgTTATTTGCTGAGCTGGGAATATTTGTATGCataaatatattgaataaagAGTGGATTAAAACTTGTCACTTAATAGAAACCTTCTCTGTTTTTAATGACTTCATTAatcactcatctgctacacaaTAGTAAATATGATGTTGAACCCTGCTAGTTTTCTCTaagtttttatttccatttccaaAGTATTGACATGTTTTCAGTTCTGCTTTTTGTGGCTATGAAACTTCATAAATACCTCACCATAAAACTGCTATATCCACCCTCTTTATAAGGTAGCATATAAATATAAGCAgctttctctcatttcctctttattgaagagaaaaaatatttttgcgtTATAATTTAGGTACTGTGGACCAAGATTCCTCCAAaacgatgtgagagactgatgaactcctacag

Function

NR:

description
TLR19

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16416 False 1493 lncRNA 0.31 2 24552427 24555612
XM_026939568.2 True 4465 mRNA 0.39 4 24552298 24561375

Neighbor

gene id symbol gene type direction distance location
LOC113542308 NA coding downstream 1810 24547264 ~ 24550488 (-)
s100t LOC108265897,LOC107594934,LOC107714712,LOC107673706,LOC108441953 coding downstream 17803 24532771 ~ 24534495 (-)
LOC113542274 cgn coding downstream 77090 24442387 ~ 24475208 (-)
tuft1a LOC108265940 coding downstream 119332 24419481 ~ 24432966 (-)
aqp10a LOC108265981,LOC108429989 coding downstream 167075 24375921 ~ 24385223 (-)
lenep NA coding upstream 21126 24582501 ~ 24583824 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding upstream 23578 24584953 ~ 24622217 (-)
si:dkey-246i14.3 LOC108269281 coding upstream 208901 24770276 ~ 24807929 (-)
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding upstream 474030 25035405 ~ 25052980 (-)
osgin2 osgin2 coding upstream 756911 25318286 ~ 25333708 (-)
G13783 NA non-coding downstream 160894 24390511 ~ 24391404 (-)
G13782 NA non-coding downstream 164295 24387289 ~ 24388003 (-)
G13748 NA non-coding downstream 233878 24317682 ~ 24318420 (-)
G13752 NA non-coding downstream 282494 24266654 ~ 24269804 (-)
G13725 NA non-coding downstream 324529 24224266 ~ 24227769 (-)
G13819 NA non-coding upstream 52878 24614253 ~ 24619949 (-)
G13834 NA non-coding upstream 152614 24713989 ~ 24718852 (-)
G14303 NA non-coding upstream 502093 25063468 ~ 25065486 (-)
G14315 NA non-coding upstream 538027 25099402 ~ 25101229 (-)
G14333 NA non-coding upstream 584466 25145841 ~ 25148263 (-)
si:ch211-105c13.3 LOC108265907 other downstream 5457 24535860 ~ 24546841 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 147768 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 312219 24236292 ~ 24240079 (-)
LOC113542286 riiad1 other downstream 403031 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 877819 23659523 ~ 23674479 (-)
pbxip1b pbxip1 other upstream 125 24561500 ~ 24578247 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 700665 25262040 ~ 25266771 (-)
bcam bcam other upstream 834112 25395487 ~ 25487425 (-)
G14258 NA other upstream 839381 25400756 ~ 25404306 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 985659 25547034 ~ 25705515 (-)

Expression


Co-expression Network