G14258


Basic Information

Item Value
gene id G14258
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25400756 ~ 25404306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16922
gtttttattctttatttaatgctgcacaaatgttgacattttatgCATGTACAGGAGAGCATCATAATATACAGTTATGTACAGTACAAGCCTATGATCTACACCTGCACATGACTACCTATCACATTGTTATTTCTTCTACTGTAATGATATCCCTGTTATGGCGGTGGAGGATTGCACATCTGATTTCTGTGAAATTGAGAAATGAATAGCTAAAGCTAAAGCATCTCAGGCAGCACAGTCAGAGGTGTAGGGAAGGTGGTTGGAGGTCACGTGGCcttgattttaatgtttttcagcAGGCAGCCATGTGTCCAGCATGGgtttgatgttgttgatggCAGTGTCGAGGTAAAGGCCAACGTAGGGACGCAGGTATTCGCCATACACACCAAGAGCATCCAGACGTGCCTTCTCAAGAGCAGGCTGCAGCTCCTCACCCAGAGCACTGAATttaccgcacacacacacacacacaGCGGCCAGCTTAGCAATAACTTGAATCCTctcgttttcttttacatgttGTGCGATTTCCTTGAGCTTCTCGCCTGTGATAGTGCCCTCAGCCAGTTTCACAAGGGTGGTATGGATAGTCTCATAGGCATTAGCAAGCCTCTTGAGAAAAGTAGCCTTTAAATCGTTATACTTTTTCACAAGCTCCGCATCTGGCTCTGGcagcacacacaggcacaccGACACTAAGGGGCAGAAAAGAGTGGATGAAAGACCATTCAGAGCTGATCAGACAACATGTTATTAGAAGTTTATATGTGTACAattcatgcatgtgtgtaaatatactgGAATTTGTGTTGCATTTTGACTTGCACTGTTTGGCATAATTTGTATCTTAGTAACTCTCTAAGATCTGCAGAACTTTGTGAATGCACGCCAAAACAGTGCTGAGTAAGGAACAAGTAATCGTTAGTGTTGCATTAAACTTTTCAGTTCCTCCCTGTTGTTAATCTTTCTTATTCTCTTTCAAAgctggttttcttttgctttcatATGTATGCTAATAGAGAAGGTTATCCCACATTTTTTGTAGATGACATTAATATATTTGTTCACATGCACATTTCTTACCCTGGAGTGCAACAATGAGAGCTAATGCCAATTTCatctgTGGTAGTATGGATCCTGATGAGATGAAACTCAAAGAGCAGCAAGACTGAAGCCGACTGTACCACCTGAGTCTGCACATACGGTCTGCCTTTAAGCCCTATATCAGTCTGACCCTGTGACCAAATAAACGtcatcacatgcacacacacacacacacacacaggtacacaactagTTATTCAAATTTTGTCTTTCTGCCTATCTTGCTCTCTCACGCATTCACAGTCACCCGTTCACttatcaaacacaaacacccacacaggaGAACCCACTGTTCTAGATACATGCATCCTCACATTCATTTGTCCACCCAAAGTCCATAGTCATTGTGGATATGTTCATGTCTGTGCAGTCACTGACCTATGACCTCAATTTACTTTATGCACTTTGCAAAGGTATAAgggatttatttttatctatgTGCATTGTGTCTTATTAAGAACTCTTTTTTGATAGCTTGCTTTTTTGCCAATAAAGTTGGTTAATGAAAGTAGAATATTGTGCTTCAAAGCTTGAACATTGTGTGTTTCTTCTTCAGCTAGTTAGAACATTTACTGTTAGATTAGCTTCCAGTACATTAGTGCTTATGTGTGACATAATTATTAGTGAAGACTGTAGAAAGTGTTGAATGATTATTTGCAAGGTAGATGGTAAAGTATTTATTTCCCAATGCCATGTTTAATGCTTTTAGACCAAATGGCATAACTGATTATTATTGTGCTGTTTGAATTGTTCTTG
>TU16923
gtttttattctttatttaatgctgcacaaatgttgacattttatgCATGTACAGGAGAGCATCATAATATACAGTTATGTACAGTACAAGCCTATGATCTACACCTGCACATGACTACCTATCACATTGTTATTTCTTCTACTGTAATGATATCCCTGTTATGGCGGTGGAGGATTGCACATCTGATTTCTGTGAAATTGAGAAATGAATAGCTAAAGCTAAAGCATCTCAGGCAGCACAGTCAGAGGTGTAGGGAAGGTGGTTGGAGGTCACGTGGCcttgattttaatgtttttcagcAGGCAGCCATGTGTCCAGCATGGgtttgatgttgttgatggCAGTGTCGAGGTAAAGGCCAACGTAGGGACGCAGGTATTCGCCATACACACCAAGAGCATCCAGACGTGCCTTCTCAAGAGCAGGCTGCAGCTCCTCACCCAGAGCACTGAATttaccgcacacacacacacacacacacaaacaaaaaaaacagcttgttcGCCTGGTTGCACTGTTTAAAACATATTGGAGTAATATTCAATGTTTTTTCCAAATTGATTACATTTGTGCCTATATGACTTTTCTGATCAAAGAACGAggacacactgaaaaaatataaaaataattctataatgATTTGCATTAGAATGTTTGGAAATAGTACCAACAGGTAAAATGAACCAGCAGAATTTGGAAAGAGCATTTTAGAGACCCAACAATATCCTATATTGCACACTAGAGCAGTGCTTAGGGCTGTTGCTGTTTGTTACAGGACACTGGGCTTCTGTGGTATGGCCTAAAAGCATTGTCTCAGATACTCACGCGGCCAGCTTAGCAATAACTTGAATCCTctcgttttcttttacatgttGTGCGATTTCCTTGAGCTTCTCGCCTGTGATAGTGCCCTCAGCCAGTTTCACAAGGGTGGTATGGATAGTCTCATAGGCATTAGCAAGCCTCTTGAGAAAAGTAGCCTTTAAATCGTTATACTTTTTCACAAGCTCCGCATCTGGCTCTGGcagcacacacaggcacaccGACACCCTGGAGTGCAACAATGAGAGCTAATGCCAATTTCatctggaaaaagaaagaaagaaaggaaacagaCATAAGTAGACATATAAGACATTGCGAAATTGCAAAGGGAGTATGCACCCCATTAACCACCAGTTTGGCAACTGCAGGTTCTCTCAAATTGCCCAGCTGATTAATACTGCTTTCTTACCTTGTGGTAGTATGGATCCTGATGAGATGAAACTCAAAGAGCAGCAAGACTGAAGCCGACTGTACCACCTGAGTCTGCACATACGGTCTGCCTTTAAGCCCTATATCAGTCTGACCCTGTGACCAAATAAACGtcatcacatgcacacacacacacacacacacaggtacacaactagTTATTCAAATTTTGTCTTTCTGCCTATCTTGCTCTCTCACGCATTCACAGTCACCCGTTCACttatcaaacacaaacacccacacaggaGAACCCACTGTTCTAGATACATGCATCCTCACATTCATTTGTCCACCCAAAGTCCATAGTCATTGTGGATATGTTCATGTCTGTGCAGTCACTGACCTATGACCTCAATTTACTTTATGCACTTTGCAAAGGTATAAgggatttatttttatctatgTGCATTGTGTCTTATTAAGAACTCTTTTTTGATAGCTTGCTTTTTTGCCAATAAAGTTGGTTAATGAAAGTAGAATATTGTGCTTCAAAGCTTGAACATTGTGTGTTTCTTCTTCAGCTAGTTAGAACATTTACTGTTAGATTAGCTTCCAGTACATTAGTGCTTATGTGTGACATAATTATTAGTGAAGACTGTAGAAAGTGTTGAATGATTATTTGCAAGGTAGATGGTAAAGTATTTATTTCCCAATGCCATGTTTAATGCTTTTAGACCAAATGGCATAACTGATTATTATTGTGCTGTTTGAATTGTTCTTG
>TU16925
gtttttattctttatttaatgctgcacaaatgttgacattttatgCATGTACAGGAGAGCATCATAATATACAGTTATGTACAGTACAAGCCTATGATCTACACCTGCACATGACTACCTATCACATTGTTATTTCTTCTACTGTAATGATATCCCTGTTATGGCGGTGGAGGATTGCACATCTGATTTCTGTGAAATTGAGAAATGAATAGCTAAAGCTAAAGCATCTCAGGCAGCACAGTCAGAGGTGTAGGGAAGGTGGTTGGAGGTCACGTGGCcttgattttaatgtttttcagcAGGCAGCCATGTGTCCAGCATGGgtttgatgttgttgatggCAGTGTCGAGGTAAAGGCCAACGTAGGGACGCAGGTATTCGCCATACACACCAAGAGCATCCAGACGTGCCTTCTCAAGAGCAGGCTGCAGCTCCTCACCCAGAGCACTGAATttaGCGGCCAGCTTAGCAATAACTTGAATCCTctcgttttcttttacatgttGTGCGATTTCCTTGAGCTTCTCGCCTGTGATAGTGCCCTCAGCCAGTTTCACAAGGGTGGTATGGATAGTCTCATAGGCATTAGCAAGCCTCTTGAGAAAAGTAGCCTTTAAATCGTTATACTTTTTCACAAGCTCCGCATCTGGCTCTGGcagcacacacaggcacaccGACACTcacacacacacacacacacacacaca
>TU16932
gtttttattctttatttaatgctgcacaaatgttgacattttatgCATGTACAGGAGAGCATCATAATATACAGTTATGTACAGTACAAGCCTATGATCTACACCTGCACATGACTACCTATCACATTGTTATTTCTTCTACTGTAATGATATCCCTGTTATGGCGGTGGAGGATTGCACATCTGATTTCTGTGAAATTGAGAAATGAATAGCTAAAGCTAAAGCATCTCAGGCAGCACAGTCAGAGGTGTAGGGAAGGTGGTTGGAGGTCACGTGGCcttgattttaatgtttttcagcAGGCAGCCATGTGTCCAGCATGGgtttgatgttgttgatggCAGTGTCGAGGTAAAGGCCAACGTAGGGACGCAGGTATTCGCCATACACACCAAGAGCATCCAGACGTGCCTTCTCAAGAGCAGGCTGCAGCTCCTCACCCAGAGCACTGAATttaccgcacacacacacacacacacacaaacaaaaaaaacagcttgttcGCCTGGTTGCACTGTTTAAAACATATTGGAGTAATATTCAATGTTTTTTCCAAATTGATTACATTTGTGCCTATATGACTTTTCTGATCAAAGAACGAggacacactgaaaaaatataaaaataattctataatgATTTGCATTAGAATGTTTGGAAATAGTACCAACAGGTAAAATGAACCAGCAGAATTTGGAAAGAGCATTTTAGAGACCCAACAATATCCTATATTGCACACTAGAGCAGTGCTTAGGGCTGTTGCTGTTTGTTACAGGACACTGGGCTTCTGTGGTATGGCCTAAAAGCATTGTCTCAGATACTCACGCGGCCAGCTTAGCAATAACTTGAATCCTctcgttttcttttacatgttGTGCGATTTCCTTGAGCTTCTCGCCTGTGATAGTGCCCTCAGCCAGTTTCACAAGGGTGGTATGGATAGTCTCATAGGCATTAGCAAGCCTCTTGAGAAAAGTAGCCTTTAAATCGTTATACTTTTTCACAAGCTCCGCATCTGGCTCTGGcagcacacacacacacacacacacacacacacacaca
>TU16933
gtttttattctttatttaatgctgcacaaatgttgacattttatgCATGTACAGGAGAGCATCATAATATACAGTTATGTACAGTACAAGCCTATGATCTACACCTGCACATGACTACCTATCACATTGTTATTTCTTCTACTGTAATGATATCCCTGTTATGGCGGTGGAGGATTGCACATCTGATTTCTGTGAAATTGAGAAATGAATAGCTAAAGCTAAAGCATCTCAGGCAGCACAGTCAGAGGTGTAGGGAAGGTGGTTGGAGGTCACGTGGCcttgattttaatgtttttcagcAGGCAGCCATGTGTCCAGCATGGgtttgatgttgttgatggCAGTGTCGAGGTAAAGGCCAACGTAGGGACGCAGGTATTCGCCATACACACCAAGAGCATCCAGACGTGCCTTCTCAAGAGCAGGCTGCAGCTCCTCACCCAGAGCGGCCAGCTTAGCAATAACTTGAATCCTctcgttttcttttacatgttGTGCGATTTCCTTGAGCTTCTCGCCTGTGATAGTGCCCTCAGCCAGTTTCACAAGGGTGGTATGGATAGTCTCATAGGCATTAGCAAGCCTCTTGAGAAAAGTAGCCTTTAAATCGTTATACTTTTTCACAAGCTCCGCATCTGGCTCTGGcagcacacacaggcacaccGACACTcacacacacacacacacacacacaca

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU16922 False 1866 TUCP 0.38 3 25401945 25404306
TU16923 True 1975 lncRNA 0.40 2 25401945 25404306
TU16925 False 708 TUCP 0.37 3 25400756 25404306
TU16932 False 1062 lncRNA 0.42 2 25400756 25404306
TU16933 False 696 TUCP 0.45 3 25400756 25404306

Neighbor

gene id symbol gene type direction distance location
LOC113545493 NA coding downstream 64147 25335601 ~ 25336609 (-)
osgin2 osgin2 coding downstream 67048 25318286 ~ 25333708 (-)
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding downstream 347776 25035405 ~ 25052980 (-)
si:dkey-246i14.3 LOC108269281 coding downstream 592827 24770276 ~ 24807929 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding downstream 778539 24584953 ~ 24622217 (-)
rps19 rps19,LOC107657656,LOC100689943 coding upstream 117183 25521489 ~ 25527931 (-)
si:ch211-79k12.1 LOC108265448 coding upstream 309160 25713466 ~ 25722244 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding upstream 368286 25772592 ~ 25840943 (-)
pard3aa pard3,LOC108431315 coding upstream 633734 26038040 ~ 26419039 (-)
cul2 cul2 coding upstream 1021078 26425384 ~ 26446101 (-)
G14439 LOC108265499,LOC108429949 non-coding downstream 10096 25388043 ~ 25390660 (-)
G14435 LOC108266725,LOC108257096,LOC108266736,LOC108266743,LOC108280559,LOC108429918,LOC108429917 non-coding downstream 23217 25350419 ~ 25377539 (-)
G14333 NA non-coding downstream 252493 25145841 ~ 25148263 (-)
G14315 NA non-coding downstream 299527 25099402 ~ 25101229 (-)
G14303 NA non-coding downstream 335270 25063468 ~ 25065486 (-)
G14444 NA non-coding upstream 3772 25408078 ~ 25429510 (-)
LOC113545502 NA non-coding upstream 94221 25498527 ~ 25511252 (-)
G14464 NA non-coding upstream 231798 25636104 ~ 25696835 (-)
G14514 NA non-coding upstream 417443 25821749 ~ 25823635 (-)
G14515 NA non-coding upstream 430698 25835004 ~ 25837637 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other downstream 133985 25262040 ~ 25266771 (-)
pbxip1b pbxip1 other downstream 822509 24561500 ~ 24578247 (-)
LOC113542209 LOC108265814 other downstream 839381 24552298 ~ 24561375 (-)
si:ch211-105c13.3 LOC108265907 other downstream 853915 24535860 ~ 24546841 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 996226 24391530 ~ 24404530 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 142728 25547034 ~ 25705515 (-)
fxyd7 LOC108429921,LOC103043934 other upstream 353749 25758055 ~ 25764694 (-)
LOC113545420 c1h18orf63 other upstream 1062505 26466811 ~ 26512794 (-)
f13a1a.1 LOC108263067 other upstream 1340712 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 2041252 27445558 ~ 27553506 (-)

Expression


Co-expression Network