G14259


Basic Information

Item Value
gene id G14259
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25399874 ~ 25401222 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16935
TGccattgagattttttttttatttgccatCATACTACAGAAAAGATGGGGACATTACAGCACAACGTAAAACTGATGTACTGatgcatatttaatttcaataaaaaatgtcatttcaaGAGAGTTACATGACTTATTTACTTGGCTATGTGCTTGCAGTTTGTTCATGGCTACTTCACACAGTATAGAACGAATCATTGATTACACGTATCTGTAAGGTATTAttgatttgttgttgtgttgcagATATTTTGTCACTTTAATCAGACCCATCTCTGGACACTTTATCTTTGATTTTGTCCCAAAAAGATCTTGCTTTCTCTTTAGCCCACTCAATGTATGGGTCAGTCACAGGCTTCACCTGGTCCTCATAGTACATGTGAACGAATTCAACTGCTGTACTGCCAACATCGACAACCTTAGTCTTCAGTTCcTTGTATGCTTCTTTGGCCCTCTCTAGAACTCCTTGGGATTCAGTTGCATTGGCTGAAATGTCCGCCATGGTCAAGCACACTTGTAGTACCATGACCACAGCAAGCATCACAAACTTGGACATCGTAACAAGTTGAGATAGAAGACTGTCTCTTGGATCTCCAACTAATATCTGGATCGACTGCTCTCTAACCTGACCTGGCCGAGTGTATATCAAGGATTTTATGGTGAAAtactttttgactttttcaGGTGTCCTTCAGTTAGAAGCCATTGGGTGGTGTAATCATGCTGTTTTGAATTAACATTCAGAGAAATGGATTacttattgtttaaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU16935 True 769 lncRNA 0.38 4 25399874 25401222

Neighbor

gene id symbol gene type direction distance location
LOC113545493 NA coding downstream 63265 25335601 ~ 25336609 (-)
osgin2 osgin2 coding downstream 66166 25318286 ~ 25333708 (-)
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding downstream 346894 25035405 ~ 25052980 (-)
si:dkey-246i14.3 LOC108269281 coding downstream 591945 24770276 ~ 24807929 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding downstream 777657 24584953 ~ 24622217 (-)
rps19 rps19,LOC107657656,LOC100689943 coding upstream 120267 25521489 ~ 25527931 (-)
si:ch211-79k12.1 LOC108265448 coding upstream 312244 25713466 ~ 25722244 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding upstream 371370 25772592 ~ 25840943 (-)
pard3aa pard3,LOC108431315 coding upstream 636818 26038040 ~ 26419039 (-)
cul2 cul2 coding upstream 1024162 26425384 ~ 26446101 (-)
G14439 LOC108265499,LOC108429949 non-coding downstream 9214 25388043 ~ 25390660 (-)
G14435 LOC108266725,LOC108257096,LOC108266736,LOC108266743,LOC108280559,LOC108429918,LOC108429917 non-coding downstream 22335 25350419 ~ 25377539 (-)
G14333 NA non-coding downstream 251611 25145841 ~ 25148263 (-)
G14315 NA non-coding downstream 298645 25099402 ~ 25101229 (-)
G14303 NA non-coding downstream 334388 25063468 ~ 25065486 (-)
G14444 NA non-coding upstream 6856 25408078 ~ 25429510 (-)
LOC113545502 NA non-coding upstream 97305 25498527 ~ 25511252 (-)
G14464 NA non-coding upstream 234882 25636104 ~ 25696835 (-)
G14514 NA non-coding upstream 420527 25821749 ~ 25823635 (-)
G14515 NA non-coding upstream 433782 25835004 ~ 25837637 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other downstream 133103 25262040 ~ 25266771 (-)
pbxip1b pbxip1 other downstream 821627 24561500 ~ 24578247 (-)
LOC113542209 LOC108265814 other downstream 838499 24552298 ~ 24561375 (-)
si:ch211-105c13.3 LOC108265907 other downstream 853033 24535860 ~ 24546841 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 995344 24391530 ~ 24404530 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 145812 25547034 ~ 25705515 (-)
fxyd7 LOC108429921,LOC103043934 other upstream 356833 25758055 ~ 25764694 (-)
LOC113545420 c1h18orf63 other upstream 1065589 26466811 ~ 26512794 (-)
f13a1a.1 LOC108263067 other upstream 1343796 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 2044336 27445558 ~ 27553506 (-)

Expression


Co-expression Network