G14303


Basic Information

Item Value
gene id G14303
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25063468 ~ 25065486 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU16983
gagaggcGGTTTGCAgttgcatttattaaaactcatttaaacaATAATATTCAGTAGAAAATCATCTCCAACTCCCACTCTTTTCTTCCCCTGCTTTTACTTCTTTTGTTTAAGGTGCATCTGGTAAAACTGTTCACAGGCAATGGACAGACCGACCACAAGGGATACAAACTCTTCAAAGTTCACCTCTCCGTCCCCATTGGTGTCCAGATCTTTCATAATCTTGTCAATGGTGGCGGGGTCTTTCTgagactgcagagagagaagattTGATGCATAAAAGGTGAAGTGGCACAACAGTAGCTGGCAAAAAATCTAAGGAAGCATGAGTGAAAATGtgtggagagaaaaaatgaCAAGCTTATGGTCTGGCAAggggaaaatgtgtaaaatgtctgAGCTGGAGATTAAAGTACAAAACTTTGAGAGTGAGTAAAGAGTTAAGAGTTGTAATAAGAGAACAAAAAGCTTGGAAGAGCAAGAGAAGCTGTCTGTACCTTAAGGAAGTTGGAGAGCTCTGCCTCCATGAGCTGCCTGAGCTCTCGGCGACTCAGTGTGTTGCTGTTGCCCTCTTTACCCGCATAACGGTGGAACACTGTGATTAGTATTTCCATAGCTCTCTCCAGATCAGACGGCATGGTGACTCACTTTTTTTTTCGGGGACAGAAAGGAACCTTTGAAGCAGAGATTTTAGTCTGGAAAGTCAGGAAAAATCTGCACATTCCTCACACGAGTATTTATAAGCCGGC
>TU16984
gagaggcGGTTTGCAgttgcatttattaaaactcatttaaacaATAATATTCAGTAGAAAATCATCTCCAACTCCCACTCTTTTCTTCCCCTGCTTTTACTTCTTTTGTTTAAGGTGCATCTGGTAAAACTGTTCACAGGCAATGGACAGACCGACCACAAGGGATACAAACTCTTCAAAGTTCACCTCTCCGTCCCCATTGGTGTCCAGATCTTTCATAATCTTGTCAATGGTGGCGGGGTCTTTCTgagacCTTAAGGAAGTTGGAGAGCTCTGCCTCCATGAGCTGCCTGAGCTCTCGGCGACTCAGTGTGTTGCTGTTGCCCTCTTTACCCGCATAACGGTGGAACACTGTGATTAGTATTTCCATAGCTCTCTCCAGATCAGACGGCATGGTGACTCACTTTTTTTCGGGGACAGAAAGGAACCTTTGAAGCAGAGATTTTAGTCTGGAAAGTCAGGAAAAATCTGCACATTCCTCACACGAGTATTTATAAGCCGGC
>TU16985
gagaggcGGTTTGCAgttgcatttattaaaactcatttaaacaATAATATTCAGTAGAAAATCATCTCCAACTCCCACTCTTTTCTTCCCCTGCTTTTACTTCTTTTGTTTAAGGTGCATCTGGTAAAACTGTTCACAGGCAATGGACAGACCGACCACAAGGGATACAAACTCTTCAAAGTTCACCTCTCCGTCCCCATTGGTGTCCAGATCTTTCATAATCTTGTCAATGGTGGCGGGGTCTTTCTgagacCTTAAGGAAGTTGGAGAGCTCTGCCTCCATGAGCTGCCTGAGCTCTCGGCGACTCAGTGTGTTGCTGTTGCCCTCTTTACCCGCATAACGGTGGAACACTGTGATTAGTATTTCCATAGCTCTCTCCAGATCAGACGGCATGGTGACTCACTTTTTTTTTCGGGGACAGAAAGGAACCTTTGAAGCAGAGATTTTAGTCTGGAAAGTCAGGAAAAATCTGCACATTCCTCACACGAGTATTTATAAGCCGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16983 True 749 lncRNA 0.38 2 25063468 25065486
TU16984 False 503 lncRNA 0.45 3 25063468 25065486
TU16985 False 505 lncRNA 0.43 3 25063468 25065486

Neighbor

gene id symbol gene type direction distance location
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding downstream 10488 25035405 ~ 25052980 (-)
si:dkey-246i14.3 LOC108269281 coding downstream 255539 24770276 ~ 24807929 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding downstream 441251 24584953 ~ 24622217 (-)
lenep NA coding downstream 479644 24582501 ~ 24583824 (-)
LOC113542308 NA coding downstream 512980 24547264 ~ 24550488 (-)
osgin2 osgin2 coding upstream 252800 25318286 ~ 25333708 (-)
LOC113545493 NA coding upstream 270115 25335601 ~ 25336609 (-)
rps19 rps19,LOC107657656,LOC100689943 coding upstream 456003 25521489 ~ 25527931 (-)
si:ch211-79k12.1 LOC108265448 coding upstream 647980 25713466 ~ 25722244 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding upstream 707106 25772592 ~ 25840943 (-)
G13834 NA non-coding downstream 344616 24713989 ~ 24718852 (-)
G13780 NA non-coding downstream 367451 24440646 ~ 24696017 (-)
G13819 NA non-coding downstream 443519 24614253 ~ 24619949 (-)
G13783 NA non-coding downstream 672064 24390511 ~ 24391404 (-)
G13782 NA non-coding downstream 675465 24387289 ~ 24388003 (-)
G14315 NA non-coding upstream 33916 25099402 ~ 25101229 (-)
G14333 NA non-coding upstream 80355 25145841 ~ 25148263 (-)
G14435 LOC108266725,LOC108257096,LOC108266736,LOC108266743,LOC108280559,LOC108429918,LOC108429917 non-coding upstream 284933 25350419 ~ 25377539 (-)
G14439 LOC108265499,LOC108429949 non-coding upstream 322557 25388043 ~ 25390660 (-)
G14259 NA non-coding upstream 334388 25399874 ~ 25401222 (-)
pbxip1b pbxip1 other downstream 485221 24561500 ~ 24578247 (-)
LOC113542209 LOC108265814 other downstream 502093 24552298 ~ 24561375 (-)
si:ch211-105c13.3 LOC108265907 other downstream 516627 24535860 ~ 24546841 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 658938 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 823389 24236292 ~ 24240079 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 196554 25262040 ~ 25266771 (-)
bcam bcam other upstream 330001 25395487 ~ 25487425 (-)
G14258 NA other upstream 335270 25400756 ~ 25404306 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 481548 25547034 ~ 25705515 (-)
fxyd7 LOC108429921,LOC103043934 other upstream 692569 25758055 ~ 25764694 (-)

Expression


Co-expression Network