G14315


Basic Information

Item Value
gene id G14315
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25099402 ~ 25101229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU17001
tCAACACagcctgttttatttaaaacttattaATATagtttatttcaaattttttttgtcacattcaTTTATCATTGTATGATGCCAAACATTTCTTTCTGTGtatcaaacaacaaaaaaatatatagataattggtatgtgtgtttatgcactACTGTGGCTGGTAAGGGTCAGTCCCCATTTAGCGCTGCTTTTGGAAGAACTCGTTGCAGAGCATGGTAATGCAGGCCACCAGGGTGACATACTCTTGGAAGTCCACAACACCATCAGCATTAGCATCCAGGTCCCTAAAAATCTTGTCCAGTGCTCCCTTGTCTTGGGTTTTCCCCAAAAATGTCTTTCAGCTCATTGGTTAGCAGATCTTTTAGCTCTGCCTTGGAAAGAGTACATTTGTCTCCCTCCTTGCCAGAGTATTTATGAAAGGCACTGATGAGCATTGCCATGCCCTGCTCCACTTGAGACATGATGACTTTTGGAAAGGaaagataatttttttaaaacatgtatatatgctttatttatttctataagcTTTATTTTCACTGAACTTGCATCCTATGAAGATTGAAGACATGTATAGCCTCATCCTCTATgtagtaaataaacacattaaagaggcagatttttttttttcagtcatgaGATGAGCACTGAAGGCTGCAGGGACCATGCAGTATTCATTTAGCTCTGCTGAACGTAGTCTATGGAACAACTGTGTGAAGATGTTTATTATCTTTAGTGATCAGTGCTTTAGCATCAACAGGTAGGCAAATGAACAAACCGGTCATTGCTGTTTCaaatacagagagagggagaatgtataattattttgaAACAGCCACTATTTGGTTTTTCTCAACAGAACAAATGTCTAACAACTGATGTGATTGAGTAAAGGAAGTTATGCTGAGCACACCcttcctaacacacacatacacacacacacacacacacacttcaatacACAGTGTGCCACGCCTAGGCCTATGGGGAGTAAGAAAGTGCTTCCTTCTGTGCTGTGACTGGATGAATTACccaaaaagaagaaataatcCAGGAGGGAGGAGAGATGGAATAATAGGCAAAAAAGAAGGGGGCTGGACTAAAGAGGAATGGTAATGTGAAGCAGTTGGTTTAAACACAAGCAAATTATGGCCAACGCCCTATCTGTTCTCTATAATTAAGAGAGTGGGTTTAAGAACAAAAGGGAGTAAAGAAAGCTGACTGTAGCCAACATTCGACAAAGCCAAATATTTCTCTGCCTAGCATCCTCCAGTGCAAGTATAGCCTCTTTTTTCTACTTCGTCTGCTTCTATGCTTGACCTAAAAACTTTTGCAGAGAGTTCACTCCACAGTCTCATAACCGTGCAAAGTCTAAGTGAAGCACATACTATATCTTACGTTGGAATAGCACTGAGAGTGAGAGGCAAGgaagatgtagagagagagagagagagagggaagaagaaATAATCCTGCACACTAAAAGATCATCTGAGAAGTATGTATTCACCGGACATAAAAAACTTTAACGTTCAGTTAGCAGCACTAATATTTACTATGGAAAATCACTagcaacactgcaaaaaaaaaaaaagcaaaacatttcagAGAACACACTCACAACAAATTCTTTCAACTTTTCTCTACTCACCTTTAGGTTTGCACGGAGAGCTACACAAGCAgaagagaagag
>TU17003
tCAACACagcctgttttatttaaaacttattaATATagtttatttcaaattttttttgtcacattcaTTTATCATTGTATGATGCCAAACATTTCTTTCTGTGtatcaaacaacaaaaaaatatatagataattggtatgtgtgtttatgcactACTGTGGCTGGTAAGGGTCAGTCCCCATTTAGCGCTGCTTTTGGAAGAACTCGTTGCAGAGCATGGTAATGCAGGCCACCAGGGTGACATACTCTTGGAAGTCCACAACACCATCAGCATTAGCATCCAGGTCCCTAAAAATCTTGTCCAGTGCTCCCTTGTCTTGGGTTTTCTGTTAACCCCAAAAATGTCTTTCAGCTCATTGGTTAGCAGATCTTTTAGCTCTGCCTTGGAAAGAGTACATTTGTCTCCCTCCTTGCCAGAGTATTTATGAAAGGCACTGATGAGCATTGCCATGCCCTGCTCCACTTGAGACATGATGACTTTTGGAAAGGaaagataatttttttaaaacatgtatatatgctttatttatttctataagcTTTATTTTCACTGAACTTGCATCCTATGAAGATTGAAGACATGTATAGCCTCATCCTCTATgtagtaaataaacacattaaagaggcagatttttttttttcagtcatgaGATGAGCACTGAAGGCTGCAGGGACCATGCAGTATTCATTTAGCTCTGCTGAACGTAGTCTATGGAACAACTGTGTGAAGATGTTTATTATCTTTAGTGATCAGTGCTTTAGCATCAACAGGTAGGCAAATGAACAAACCGGTCATTGCTGTTTCaaatacagagagagggagaatgtataattattttgaAACAGCCACTATTTGGTTTTTCTCAACAGAACAAATGTCTAACAACTGATGTGATTGAGTAAAGGAAGTTATGCTGAGCACACCcttcctaacacacacatacacacacacacacacacacacttcaatacACAGTGTGCCACGCCTAGGCCTATGGGGAGTAAGAAAGTGCTTCCTTCTGTGCTGTGACTGGATGAATTACccaaaaagaagaaataatcCAGGAGGGAGGAGAGATGGAATAATAGGCAAAAAAGAAGGGGGCTGGACTAAAGAGGAATGGTAATGTGAAGCAGTTGGTTTAAACACAAGCAAATTATGGCCAACGCCCTATCTGTTCTCTATAATTAAGAGAGTGGGTTTAAGAACAAAAGGGAGTAAAGAAAGCTGACTGTAGCCAACATTCGACAAAGCCAAATATTTCTCTGCCTAGCATCCTCCAGTGCAAGTATAGCCTCTTTTTTCTACTTCGTCTGCTTCTATGCTTGACCTAAAAACTTTTGCAGAGAGTTCACTCCACAGTCTCATAACCGTGCAAAGTCTAAGTGAAGCACATACTATATCTTACGTTGGAATAGCACTGAGAGTGAGAGGCAAGgaagatgtagagagagagagagagagagggaagaagaaATAATCCTGCACACTAAAAGATCATCTGAGAAGTATGTATTCACCGGACATAAAAAACTTTAACGTTCAGTTAGCAGCACTAATATTTACTATGGAAAATCACTagcaacactgcaaaaaaaaaaaaagcaaaacatttcagAGAACACACTCACAACAAATTCTTTCAACTTTTCTCTACTCACCTTTAGGTTTGCACGGAGAGCTACACAAGCAgaagagaagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17001 False 1697 lncRNA 0.41 2 25099402 25101229
TU17003 True 1704 lncRNA 0.37 2 25099402 25101229

Neighbor

gene id symbol gene type direction distance location
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding downstream 46422 25035405 ~ 25052980 (-)
si:dkey-246i14.3 LOC108269281 coding downstream 291473 24770276 ~ 24807929 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding downstream 477185 24584953 ~ 24622217 (-)
lenep NA coding downstream 515578 24582501 ~ 24583824 (-)
LOC113542308 NA coding downstream 548914 24547264 ~ 24550488 (-)
osgin2 osgin2 coding upstream 217057 25318286 ~ 25333708 (-)
LOC113545493 NA coding upstream 234372 25335601 ~ 25336609 (-)
rps19 rps19,LOC107657656,LOC100689943 coding upstream 420260 25521489 ~ 25527931 (-)
si:ch211-79k12.1 LOC108265448 coding upstream 612237 25713466 ~ 25722244 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding upstream 671363 25772592 ~ 25840943 (-)
G14303 NA non-coding downstream 33916 25063468 ~ 25065486 (-)
G13834 NA non-coding downstream 380550 24713989 ~ 24718852 (-)
G13780 NA non-coding downstream 403385 24440646 ~ 24696017 (-)
G13819 NA non-coding downstream 479453 24614253 ~ 24619949 (-)
G13783 NA non-coding downstream 707998 24390511 ~ 24391404 (-)
G14333 NA non-coding upstream 44612 25145841 ~ 25148263 (-)
G14435 LOC108266725,LOC108257096,LOC108266736,LOC108266743,LOC108280559,LOC108429918,LOC108429917 non-coding upstream 249190 25350419 ~ 25377539 (-)
G14439 LOC108265499,LOC108429949 non-coding upstream 286814 25388043 ~ 25390660 (-)
G14259 NA non-coding upstream 298645 25399874 ~ 25401222 (-)
G14444 NA non-coding upstream 306849 25408078 ~ 25429510 (-)
pbxip1b pbxip1 other downstream 521155 24561500 ~ 24578247 (-)
LOC113542209 LOC108265814 other downstream 538027 24552298 ~ 24561375 (-)
si:ch211-105c13.3 LOC108265907 other downstream 552561 24535860 ~ 24546841 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 694872 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 859323 24236292 ~ 24240079 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 160811 25262040 ~ 25266771 (-)
bcam bcam other upstream 294258 25395487 ~ 25487425 (-)
G14258 NA other upstream 299527 25400756 ~ 25404306 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 445805 25547034 ~ 25705515 (-)
fxyd7 LOC108429921,LOC103043934 other upstream 656826 25758055 ~ 25764694 (-)

Expression


Co-expression Network