G14444


Basic Information

Item Value
gene id G14444
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25408078 ~ 25429510 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU17191
ttTTTTAACACAGAAGTGCACCTGAGAGCTACTAATACACAAAGAACGAATCGTAACTGTTGAGACTGAGTACTCATTTTAAGTAGGCTTAGTGTTTACAGCATATTTAGCCCATGCTGTGACCTTTGCTGTATGCATTGAAGGTGCTGTATGCATTGTTGTGGAGTGATGCCATCCAGGAAGGTAGACAGCTTAGTTTTATGCCAGGGGAAGATGAGTGTTGTGCTCCTTATAGCTGCTTTAGATTGTGGTAAGGGGCTCCAGCTTTACATGACTGAGGACCAGAGTTCAAAAAAGGAGTTATAAGAGATAAGGGGCTTAAGCATTCTCCGCGGTGTAGATCATGTGGTAAAGCTGATCCTGGACGATGCCTGCATAGGTGCGCACGGCTCCTGTTGTCTCCTCATACAGATTCCTAAAAAGAGACCACGAAATGCACTGACATTAATGACCATTATAGTAGTATGTTATGCTGTAGAACTATTGCATTGATCAGAtgatgtggggggaaaaaaaagcatgtagtATGATCATAGTAGAGGTTCACCCACTTAGCTTTCTCATCCAGCTTGAGATCCTTGATGGTCTCTACGTATGAACCGGCAATGTCCAGGCTGTAATCATAATAGCTCCTCAGTTTGTCAATCACAAAGGTAACAGGTCCAGCTTCCTCATTCTCAGCCTCTCTGGGTAAACGGAAGCTCTCCACACCTACAATAACATCACTGCATTTATTTCATGGCTAATGAAGGCCAGAATTTTTCATTACTAGCTTTAAATGATAACCGTTCCACTGAGCGTTCTTTTGCTTCATTCCATAATGTGTGCAATGTAAATGTGATCCATGGAACTCATAAATGATTAGGTTTCTGTATAGGTACATGTCTATGTGTGTATCATTACATACCCAAGGCGAGGACTGTGATCAGCACGGTGACAATGACCAGCTTGTTCATGCTGACTGTTGGATCTGAGGAGAAAATGAAGCCAGTTCATGATGACGTTATCAGGTCACTGCTTTTAGTGCTATTTACTGTGTTTAGAGACCATCTCAGTCAATGTCTTAAGAACCTGTGCTAGAAGTAGATGCTATCCTCATATCAATCATTTTCATTGCTCTAACAATGTCTAATGGCATTAGAGGTAGATGAGATAAGGCACAGGAGAAAGACCTGGCAAAATATCTATTATTTTAGCAGAAATATTAATCCAATAGTAAATTTAAATCGCATacatttttatgtgtgttttgttttgtaatgtgCTATATTGTTagcaaatgctgcaaaaaaaaaaagaatctacaCGTTTTCTAAGGTCCTAAACCATTATAACCAAAAAAGctgacttttctttctttctttctttctttttctttttttttttgcatctgtgTGATTCCCAGAATTGAATGAAGAGCATAAGGATGGCTGTACTCACTGTCTCTCCTCAGTAGGAAGTGTGTAACGTTGTTTAGCAGGTCAGGCACCTTGGCCTATCTTATATATATGAGGACAGATATGTTGACTATTCAGAGAGCAAAGTGCAACTCTCTCTTTTtatgagtgaaagagagagagagagagagaaagggtgtCACTAAGGGTAAGGTGTGAACATGAGATCAAATTTATCTTATTGTTAAGATAATTGACTCAATATCTGTGCTACAGCCGGTCATTGTACAAATTCAGGCTGCTTATTTTGTTAGCTTTGATCATTGGTCATTGATAAAGTAGACAGCAATCTTTGGTGGAAACTAATGATCCAGTCATTATCCAAATCCAATCAACTGC
>TU17193
attcatttttttttTTAACACAGAAGTGCACCTGAGAGCTACTAATACACAAAGAACGAATCGTAACTGTTGAGACTGAGTACTCATTTTAAGTAGGCTTAGTGTTTACAGCATATTTAGCCCATGCTGTGACCTTTGCTGTATGCATTGAAGGTGCTGTATGCATTGTTGTGGAGTGATGCCATCCAGGAAGGTAGACAGCTTAGTTTTATGCCAGGGGAAGATGAGTGTTGTGCTCCTTATAGCTGCTTTAGATTGTGGTAAGGGGCTCCAGCTTTACATGACTGAGGACCAGAGTTCAAAAAAGGAGTTATAAGAGATAAGGGGCTTAAGCATTCTCCGCGGTGTAGATCATGTGGTAAAGCTGATCCTGGACGATGCCTGCATAGGTGCGCACGGCTCCTGTTGTCTCCTCATACAGATTCCTAAAAAGAGACCACGAAATGCACTGACATTAATGACCATTATAGTAGTATGTTATGCTGTAGAACTATTGCATTGATCAGAtgatgtggggggaaaaaaaagcatgtagtATGATCATAGTAGAGGTTCACCCACTTAGCTTTCTCATCCAGCTTGAGATCCTTGATGGTCTCTACGTATGAACCGGCAATGTCCAGGCTGTAATCATAATAGCTCCTCAGTTTGTCAATCACAAAGGTAACAGGTCCAGCTTCCTCATTCTCAGCCTCTCTGGGTAAACGGAAGCTCTCCACACCTACAATAACATCACTGCATTTATTTCATGGCTAATGAAGGCCAGAATTTTTCATTACTAGCTTTAAATGATAACCGTTCCACTGAGCGTTCTTTTGCTTCATTCCATAATGTGTGCAATGTAAATGTGATCCATGGAACTCATAAATGATTAGGTTTCTGTATAGGTACATGTCTATGTGTGTATCATTACATACCCAAGGCGAGGACTGTGATCAGCACGGTGACAATGACCAGCTTGTTCATGCTGACTGTTGGATCTGAGGAGAAAATGAAGCCAGTTCATGATGACGTTATCAGGTCACTGCTTTTAGTGCTATTTACTGTGTTTAGAGACCATCTCAGTCAATGTCTTAAGAACCTGTGCTAGAAGTAGATGCTATCCTCATATCAATCATTTTCATTGCTCTAACAATGTCTAATGGCATTAGAGGTAGATGAGATAAGGCACAGGAGAAAGACCTGGCAAAATATCTATTATTTTAGCAGAAATATTAATCCAATAGTAAATTTAAATCGCATacatttttatgtgtgttttgttttgtaatgtgCTATATTGTTagcaaatgctgcaaaaaaaaaaagaatctacaCGTTTTCTAAGGTCCTAAACCATTATAACCAAAAAAGctgacttttctttctttctttctttctttttctttttttttttgcatctgtgTGATTCCCAGAATTGAATGAAGAGCATAAGGATGGCTGTACTCACTGTCTCTCCTCAGTAGGAAGTGTGTAACGTTGTTTAGCAGGTCAGGCACCTTGGCCTATCTTATATATATGAGGACAGATATGTTGACTATTCAGAGAGCAAAGTGCAACTCTCTCTTTTtatgagtgaaagagagagagagagagagaaagggtgtCACTAAGGGTAAGGTGTGAACATGAGATCAAATTTATCTTATTGTTAAGATAATTGACTCAATATCTGTGCTACAGCCGGTCATTGTACAAATTCAGGCTGCTTATTTTGTTAGCTTTGATCATTGGTCATTGATAAAGTAGACAGCAATCTTTGGTGGAAACTAATGATCCAGTCATTATCCAAATCCAATCAACTGC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU17191 False 1796 lncRNA 0.27 2 25408078 25411719
TU17193 True 1806 lncRNA 0.39 3 25408078 25429510

Neighbor

gene id symbol gene type direction distance location
LOC113545493 NA coding downstream 71469 25335601 ~ 25336609 (-)
osgin2 osgin2 coding downstream 74370 25318286 ~ 25333708 (-)
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding downstream 355098 25035405 ~ 25052980 (-)
si:dkey-246i14.3 LOC108269281 coding downstream 600149 24770276 ~ 24807929 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding downstream 785861 24584953 ~ 24622217 (-)
rps19 rps19,LOC107657656,LOC100689943 coding upstream 91979 25521489 ~ 25527931 (-)
si:ch211-79k12.1 LOC108265448 coding upstream 283956 25713466 ~ 25722244 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding upstream 343082 25772592 ~ 25840943 (-)
pard3aa pard3,LOC108431315 coding upstream 608530 26038040 ~ 26419039 (-)
cul2 cul2 coding upstream 995874 26425384 ~ 26446101 (-)
G14259 NA non-coding downstream 6856 25399874 ~ 25401222 (-)
G14439 LOC108265499,LOC108429949 non-coding downstream 17418 25388043 ~ 25390660 (-)
G14435 LOC108266725,LOC108257096,LOC108266736,LOC108266743,LOC108280559,LOC108429918,LOC108429917 non-coding downstream 30539 25350419 ~ 25377539 (-)
G14333 NA non-coding downstream 259815 25145841 ~ 25148263 (-)
G14315 NA non-coding downstream 306849 25099402 ~ 25101229 (-)
LOC113545502 NA non-coding upstream 69017 25498527 ~ 25511252 (-)
G14464 NA non-coding upstream 206594 25636104 ~ 25696835 (-)
G14514 NA non-coding upstream 392239 25821749 ~ 25823635 (-)
G14515 NA non-coding upstream 405494 25835004 ~ 25837637 (-)
G14506 NA non-coding upstream 411612 25841122 ~ 25841958 (-)
G14258 NA other downstream 3772 25400756 ~ 25404306 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other downstream 141307 25262040 ~ 25266771 (-)
pbxip1b pbxip1 other downstream 829831 24561500 ~ 24578247 (-)
LOC113542209 LOC108265814 other downstream 846703 24552298 ~ 24561375 (-)
si:ch211-105c13.3 LOC108265907 other downstream 861237 24535860 ~ 24546841 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 117524 25547034 ~ 25705515 (-)
fxyd7 LOC108429921,LOC103043934 other upstream 328545 25758055 ~ 25764694 (-)
LOC113545420 c1h18orf63 other upstream 1037301 26466811 ~ 26512794 (-)
f13a1a.1 LOC108263067 other upstream 1315508 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 2016048 27445558 ~ 27553506 (-)

Expression


Co-expression Network