G15012


Basic Information

Item Value
gene id G15012
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26104667 ~ 26109833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU17816
ctttgtgCTGTAAATACCTAAGCATTGGTCTTGTGAGCTAATAGAAAACAAGTAGACAGGACTGTGTTCTCTTTGATCAGTAAATAAATGGAGGAGTTGCTTAGTATTAAGTAGCAGTCACATCAGACTTTTCTTACTGGTGCATATCATCTGCTGACAtacactggattttttttagtgacattctgttttatttatttgttttttcttttctgcctgctaggattttcgtGTTAGTAATTTTGTTGTTGGCACCTCTGGTATTAGCAATGTTTGTAATTGATTCACATTTACAATTTCACCAATAATCATAATTGGAACTGTCCACACTGTCCATTTCTATAGATTTAATGACAGTCAGGAAATAAACTAGAgttataatgatgatgatatgattcCAAGGTAAAAATCATGTGACATaaccattttgtttgtttgtttgtttgtttcaagaTCAGCAGTGCTGATGTGCTACAACTGAACCCTTGcagtggaaaaggaaaaaaaaaaaaaacatttgacatTAGGTACTGGCAGCTTGTCAGTGGTATATATAGGTCATTCACTGTTTCTCCTATTGTGGCCAAAGTACTAACATTTCTTTTAAGATAGGAAGTAGTTCAAGGGGACGTTGCTATAGTAtttttacatacacattatataccAGTGGACATCTGTTTAAAAGCATTGCTGTTATATTACTCTCTCTCATATTTTGGTAGGTTGAGATTTCTGACAGAGGCCTGTTTCTGTGGCTGCActgctctctctctctctctctctctctctctctctctctctctctcatctctctctcttccatgtacataaacacactctcacCTCACACTGAGCTGGTGTTGACAAGGTGTGGACAGAGCAGCAGGTAGGAGGCCTTCACACACGTCACTCTGTCACACCCATCAAATCTGTCAGGCAGATGGACCTGCTGCCTTTTTACACAACTGCGTAAATGATATCAGTGTAAGGAAATGGCTTGACTCAGGTTGCACAAGTAAATGGAATCAAAGGCTAGTGATTGATTTTAGCATGTTTAAAAGGCAATTATCAGAGAACGTGGAGCTGGATTCCCGTTCTCAGTCAGATTCAAATCAAATCACTCGACTCAGTCGGAGTGTTGTGTCTTTTTTCAGTGTGAATGGTATGCGATCAGTATGAATTAAGATGAACCCTCAGAACACAAACCTGGTCAGCACTGAACTGCAGTGGTTGTGTTCTGGAGCTGTAATTAATTTCCCTATTGTCCATCGCTTCTGCAGCTCCAATCCCTCATCCATGGAGAGAATCGCATTAGTTTGTTATTTTCCGAGCTTGTAACTGTGCTTCTTTTTGTCATTTCCCGCTATTGTCACTGCAATCCCTCATCCTTGTGAGCAGCAAGCTGCAAATCGGATCACCAGGGCAGCCTTATTGTAATGAACACAAGTAAGGAAGTGAGAAATTACATGTTTCTCAGTGTGTAAAGCAGCACTGCCGTTTTAGTAGAAAGTTACAAAAGATTACAAAATAGATATGAGAGCTCTGAAGAATAGGGCTGGGAGTACAAGAAGTCTATTGTTTCTTTTGGACTAAcattgttttggaaaaaaataacattgagATAAAGTGGCTACACATGTGAACCATATAAAGGAGCCACAAGACGAGCTTCCACGCAAAAGGAGATGAAGTATGTAAGAGAAGAGTGCTAAGTAGTGTTGGTATCTGATTTGATTAATACACGACAAAACATTGTGAGGTAAAGAAACAGCAGAACAGGACAAAATATAACAGTGCGTTGCACACTAATGGTATTGTATCTTTTATAGGAGACTTTTAGGAACAATTTACAAACTTACAAATTCTTAGTGACGTATTTGTTGTTGAGAGGATTTGGTATGATCAGACAGTGGGTCCAGGTGTCTATATACATAATTTGCTTTTGTTTCTAAAGTACTATTCCGACAGGATAATATTTCTGAACATATGTCTGTTAAGTAATGTTAGACCGAAGACTTCTGTAATATGATCAACTCACAGGTGATCTCTGTATGAATCACAGAAATGAGAGTCTTCACGATGCATTCATGGCCCCTGGCTACTATGTAAAccttatattaatgcacagtgattgttttgttttaggtcCTGTGGCAGCTCAGGTTCTGCATGATTGTTAggtggtcacatgaccataaggCTTTATCTGTCGCAGGAACTCAATAACTTACATAAATCCCCAGAAGTGTTGCATTTCAGACAAGTCCTTTCAAATGTcgtctgtattttattttgagtttCCTGGTTTGTTTGTACTGTAGAAAGTGTGAAACCTCTGTTTCTACAGGATATAATGGAGTCTTTACAATTATGTCAATTCAGATGGgatatatttattacttatttttatttctacaggTCCTTTGATAGTagattaaaaattgtttaatctTTCCAGACACTGGAAGATGCAGCCAGTAAAAATGACTGATATGACAGAGTAGCAGCAGCTACTAAAAGTCATAaactaactgttttttttttttctattataattATGATTCATACATACTCCAAAGAAAAATTATTCCGAGTTAAAAACACTCCTTGTTCTATTTGTCTTTCATATGGAAAGGTTAAATATCATAAATGTCTGGttacatttgtgatttttattttttaattttttgtagaaaattttattaattcttttatCTTGACAACCAGGTATGGTTGAGCTCAGATTTCTCAAGTTCACAAATCAGAGCGAAAAAAGTGTCAAGGGACTCAGTGGCCGACTTTTGGTTCTGTACACTAGGTAGAAAAAATGTATGCATTCTTGTTTCTTAATGAGGCTGACTCTAGATGagcaaggagaaaaaaaaataccaggTCCATCCTATTCCCACCTTACTGTATATGGCCCATAAGGGTGGCAGGACGCAGCAGGCTCCACTGTGGCTGCTGTCAGCATTAATAACTCCACAGAGACAAAGGAGGTAATCAGCCTGCGCATTGCTGTCTGCGATTTCACCAAAAAGCCTAATAAAATCCAAGGGCCTAGGCATCCATTCACTTTAATGATGCCTGATTGCTAGTAAAATATTGTGTTAGCGTTTTTTTGTGTAAGAACTATGGGTCGCTTTTCTATTGACTGTCCCTAATGGAGCTGTGATGTCATGCATAGTGGCTCTAAAGGTCTAGTGGAGTTTTGTTATGAGCAGCAGTGACGGAGAGGCTTCTTTGAGACTCTAACTAAATCACTATAATAAAATTTACATGCTGATTGGCTCAAGCAGCGTGCGAATCATGCAAATATTTCTGATATGTTGGGGGGCAGTTACACACTTTCAGAAGgcagataaaatattttttaaagctcaTTTCTGCTTCAGTGCTAATTGTCGTCCTATACAGCATACCTTTATTTTACATGCGTCTCTCTGTATGTGAGACAGTAGTGAAGCAGAACCTGAGAATTTTTGAGTGCTAAGACTTGGGTAAAAGTATCCATCACTATCCACTAAGAGCCACAGATAATGCTCTGATGGCAAGACTTTGAGAACTAAGACCATATGCAGCTGGATGTGTCCACATAATTGTGGTGTTCTGACCACATAATTGTGCCATTTTAAACCAGCCATGTCCTTAATTATTTATGAGAAGAGAGaatcaaaaaaatgaaatgtacacaattttccacttaccccaaatgtagctGATCAGCCAAAGCCATGATCAAagtgcttctttagttttgtatcAGAGCTGCAAGGCTCAGCtaatagctaccagtttagtaTCAGGCACACTGCATGTCTAAGTCCTATACTTGTTTGAGGTTTGTGACAATCTGTGACACACTGCTGTCTTCAAAATGGATTAAAGTATGTTGCATAGCTTAAAGACAGCTTCCCCAGCAACCTTGGAGCCAGAAGCTTTGCAAActgcatcatcacacactcgcttcAAAAGGTACTGTTTGGCTCAGTAGTACCATTTCTGCATAAACATTTAGCAGAACAAGttggtattaaaaaataaatatagcctATATGTACATTCAGAAGTCTGTTATTACCAATAAGCCTATAATTAGTGCGTTATTACCATTTTCAAACACTGGGCCACACCTCCTGCCTGAGAGTACATGGAGAAAGAAAGCTTCAAGATGACTGCTTATACTGTTTTTAGCTGTGCACCATACTTTCGTCCATTTTTATAGATATCAATGTGTCACGGTATCAGAAATTAAATAAGCAAATCTGTTTGAAATACAGAACAACGCAAGTGTGTGACACTAGACATGTATTCACTACtgttatgtttttgggaggaaaccataAAACATTGTGGAAACCTatgaggaaacaggagaacatGTTTAaatccacacagagagtaacctgagttcaggatcctaccagggaccctggagctgtgaggcagcaacgctacccactgcaccaccatgccggCCCTCAACTGATTATTTgatggaaagttttttttttctttatcttcttctttttttttattttttattgcagAACAGTTCCTTCTTGAGTGTGGGCTCAAAAGGTGCTCACACATCAATGTTTGTTGCAATGCTTTTAATGGAAAAGCTAATGAGTGATCAGACACGCTCCTACATTTATAGATTACTCATCCATACTTTTATTTCACAGATAATCTCAGCTCAACAGATACTTAATATCtaatgaatgagcaggtgtgtgtgtgtggtgtgcatgTATTTTGACTACAGTTTGACCTCATATGCATCAAATAGTGTAATACTGACAGTTTTAAAATTCTGCAATGCACAAAATTCATCTTCCATCCCTCATGTGCAATAAAAATGGGTGTGATATTAAAACTAATCTGTCTCCAAGGCTTTGGCGCTGAAAAATAATTGCTTTCACTTTCCAGCTTTTCCTCGTTCTCACTCCCCCTCTGTCTTATATGAGCAGATATTCAGAGatgcatattctctctctctctctctctctctctctctctctctctctctctctcaaacacacacccaagaGGTTAACCATAATGAGGGCActcagtaaaataataataaaaataatggtcTGGTCATTCATATGAAGTATATGGCTTTTTCAGCTGACTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17816 True 5145 lncRNA 0.43 2 26104667 26109833

Neighbor

gene id symbol gene type direction distance location
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding downstream 263724 25772592 ~ 25840943 (-)
si:ch211-79k12.1 LOC108265448 coding downstream 382423 25713466 ~ 25722244 (-)
rps19 rps19,LOC107657656,LOC100689943 coding downstream 576736 25521489 ~ 25527931 (-)
LOC113545493 NA coding downstream 768058 25335601 ~ 25336609 (-)
osgin2 osgin2 coding downstream 770959 25318286 ~ 25333708 (-)
cul2 cul2 coding upstream 315551 26425384 ~ 26446101 (-)
LOC113545413 lyrm4 coding upstream 420926 26530759 ~ 26576298 (-)
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding upstream 625378 26735211 ~ 26740685 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding upstream 740877 26850710 ~ 27020775 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding upstream 1199183 27309016 ~ 27319449 (-)
G14506 NA non-coding downstream 262709 25841122 ~ 25841958 (-)
G14515 NA non-coding downstream 267030 25835004 ~ 25837637 (-)
G14514 NA non-coding downstream 281032 25821749 ~ 25823635 (-)
G14464 NA non-coding downstream 407832 25636104 ~ 25696835 (-)
LOC113545502 NA non-coding downstream 593415 25498527 ~ 25511252 (-)
G15111 NA non-coding upstream 200190 26310023 ~ 26314327 (-)
G15163 NA non-coding upstream 293690 26403523 ~ 26407129 (-)
G15174 NA non-coding upstream 336819 26446652 ~ 26446940 (-)
LOC117597861 NA non-coding upstream 338823 26448656 ~ 26452315 (-)
G15313 NA non-coding upstream 623529 26733362 ~ 26782469 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 339973 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 399152 25547034 ~ 25705515 (-)
bcam bcam other downstream 617242 25395487 ~ 25487425 (-)
G14258 NA other downstream 700361 25400756 ~ 25404306 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other downstream 837896 25262040 ~ 25266771 (-)
LOC113545420 c1h18orf63 other upstream 356978 26466811 ~ 26512794 (-)
f13a1a.1 LOC108263067 other upstream 635185 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 1335725 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 3438333 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 3687920 29797753 ~ 29814814 (-)

Expression


Co-expression Network