G15163


Basic Information

Item Value
gene id G15163
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26403523 ~ 26407129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU17971
GTTTATCGTGAGgcattaaatatacatacataagtacattaaatgaaactatgaatggataaaaggtatgatATTTtgtcctttaataaacaaaaattgtaaCGATTGCCAAATTACTGTGATGAtataagacgaataaaacactttggggtggcatgttattggaaaattacTACTATTTGATCTTTTAGCAGAACTCAACAGTGGTGCATATTGTGCATCATGAACACCTCTTTACTTGTTGTGATACTGTGTTTTTGTCCCACTGCCCAGCCCTTGTATGATCTTTCGAGAGGAATGCAtggacacacactgtacacactgtgtgttcCGTTTTGCCCTTTCCAGAAATGTGTTTAGGGTGTCATTAATGGTCAACGAGTAAAAAGGAAGTACTTCAGATGACTGTATGTGGAActagtaaaaagaaaaaagtggctTTGTGGGCTACATTGAGTATTATCAGACAAATAGAAACTGAtgctctgttttttatttatgtgtatttgtgtgtgtgtgttgtgaaTATGGGTCAGCAGGGATTACGTTGTCTGTCTCTGATCCTTTCCAGTGACCGATTCTGCGTAACAGAGGGGGATAAAGGCGGCAGCTGCAGTGTTATCTCACTTCACCCTCCCTACTGCGTCAGGTCACTACttagtcacacactcacacaggacGCTCTGTGTGGAAGTCGGTGTCATGAAAGACAAATTGCTGTTAGCGTGAACTGAACTGTGTCACCTAGTGAATGAAACCTGGTTGTTTTGATAGATTGCCTCACAGATTAGGGAGATGAATGAAAGCAGTGTTTTAGAAGTGCACAATGctcttttaataatatttacactaTTTCTGTGTCAAGGTTCTTGTGGATGATTAAGTGTCGTTTCACAAAGCAgtgcaagaaaaaaagcattaagTATGAAATTAGAAGACAACTTATTTGTCACTCGAACAGATCAATTTTCTTTtgggtgtttgtgtgatttgtgatgCTGTTTTTAAGGTTTAAAGTTGCTTGAGCTTGatacacacattaatatgtAGCACTGCACAGATGCAGTGGCCTTGGGTGGAGTGACGTCAGTGTTTCGGCGTTTGGCGTCACAACACACTGAGATAACGGCCATTTCTGGCTGCAGCAACTTGCCAAACCTCGCAGAAGGTTTTTCGGAGGTCAAACTGCTTTCTTTACATTCTCTAGAACAGGTAAAGCTCATTAGGTTAATTGTTAACTAAAAGCCCCCATGAGCTGAGCATGTTTGGTTACAGAAGCGTGAGAAAGCATAAATTTACACTGCTTCAGAGACACTGTAGGTTCACGTGTGAAGTATTCCCTTGACCCTTTGAGCAGTATGGTGAAAATCACGGGGTGAAATAGGTTCAGTTATTTGTATTGGTTTCATCCAGCGGTTTAGATATTCAAGGTCTCCAGGTTTGCACCAGCGGGGTTGCCATGGGCAACGACACATTCAGTTTTTTAAGAGCTGAAGTAAAGGAGCGacgtctttctcttttctcttgttCGTCTTCCCTCTCCCTGCTTTCCATAAACAGAGGAAGTGTGGACATGTaaacaatggatataaaaagccCAGGGGATTGGGTTAGGTGATTAAGACAGCTTCTCAGCAGCGTGACTCTCTGCATATTCGAGTATGTCTAAGTTTCGGGCTGGGTTTCTATATGGAGTCCACCCAGTTGTGGTCTCTGTCATGTGGTGACTCATAATATATATGTGGATCTTTTCTTGTGTGtgcttgtttggCAGTATTCATTAACTGAATACTTGCTCTCTGGTGTGTAAATAGTCTGTAAGAAGTCAAAGTAAAATTTGTAGAGCTGAGAAGAAGGCAGAGGCCAAAATGGCCAAAACCAGTAGTGTGCATGTAGAAACAAACACAACGCATGACTACTTCCAACTTGTTTATAAAttctgtgtgtaaaatatttcttaCATGTGCGCCTCTGCAAGCTTGTTCTTTCCCTTCAGCACAGTAGCATTAGGGCTTGATCTGTGGCTTCCTGTGACGCCGTGGTCTCGTTCCAGCTCTCCATGTTACACTGGAGGAAAAAGTCATGTCGCTGTCAAGAATGTATCCGGAGTATTAATACCTGGCGACATGAGCAAAAAAGCTTTGATTCATTGAGAGAGACTTTTTACAAGCTTGGAAGCTTGGttgtgaaaggaaaaaaatagttCCTGTGTTGTTCTACAAATCCTCAGCATCCACACTGAGTATCGTATGTGAACACAGGTGTATTTGGACAGCTTTTACTCTGTTCCATACATGGATACATGTCTGAACTTGAAATGCTGAATTTTTTCAGCTGCTTTTAACTTACACATTCCTGCACTGTTGCTGCAGTGAGTGGTCATGGCTCTTCTCCATGCCGGCATGCTGTAGTACTAAATCTAGAGTGTCAGCCTTGAAtgccaaacacacagcaaaccttGGGCAAGCATATGAAGGCACATGACTGGAATGAAAGCTGTGTTCagtgtgcctttttttttaaatgctattcTACGTTAGTATGATTGATTTAAGTATAGATGTCAAATATGCAGATTTTGTTCCTGAGTTAGGAAAAATATATGCAGCTTTGATTTAGTGAATTATTTCATGGATGgatgttttaatctttttaggTTATCTTGTGCACCAAAACACATTCCTTACAGTAGTTGGGAATAAAGCTTACGGTTTCTTCATACCTGGATTTCTTTGTCTGTTCAAGGCTGCAGCCTTCGCGAGTGATTAGATGTTGTGAAGctgtagctattttttttaccatcCAAATATGCAGAAATGTTACAAGCTCAGCAACAAATAAAGGCGTTCACTACGTGTGTTTTATATACTAAACAGGAGCATGAAATTGTGCACATACTTTGATACCTAGCCAGACACACGGCCCTGGAATTAACCCTTAAAGGGAACCTGGGTAGCACCTTGTGTTTTGGATTATCACCCTGTGGTGTTTTTGAAGCACAAAAGTGTTCCTCTCCAGTGAAACTCACGCCAGTTGAAATGACAGGTTTGTGGGACGACGTGGACGTGTTGGAGCAGAACTGAAGTATTCGCCTCGCTCTGTTGCAGCATGCAGGACAAGCCCTTATGGGTGTGATCATACTCATTGGTGTCAACAAGCTTTCCGTTTGGTCCGGCGTTTGGCGCAACTCTAGTGCGGTGCTATTTACTTTATCAGCTCCATCTTACACACTTTTCTTCAAGAATCACTTCCTTGGGTGAAGGGTCATCCATCCGATATCATACCAAGGGAGCATTAGAGGAGTCATTAACTACTTTCCtagaagcagtgtgtgtgtttgcctttgAGTCACATGACACCGAAGCACTTAGTATGACCCACAGGGTCTTGCTTAATGCTGTGTTGAAAATCCATAATTTGATTGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17971 True 3427 lncRNA 0.40 3 26403523 26407129

Neighbor

gene id symbol gene type direction distance location
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding downstream 562580 25772592 ~ 25840943 (-)
si:ch211-79k12.1 LOC108265448 coding downstream 681279 25713466 ~ 25722244 (-)
rps19 rps19,LOC107657656,LOC100689943 coding downstream 875592 25521489 ~ 25527931 (-)
LOC113545493 NA coding downstream 1066914 25335601 ~ 25336609 (-)
osgin2 osgin2 coding downstream 1069815 25318286 ~ 25333708 (-)
cul2 cul2 coding upstream 18255 26425384 ~ 26446101 (-)
LOC113545413 lyrm4 coding upstream 123630 26530759 ~ 26576298 (-)
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding upstream 328082 26735211 ~ 26740685 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding upstream 443581 26850710 ~ 27020775 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding upstream 901887 27309016 ~ 27319449 (-)
G15111 NA non-coding downstream 89196 26310023 ~ 26314327 (-)
G15012 NA non-coding downstream 293690 26104667 ~ 26109833 (-)
G14506 NA non-coding downstream 561565 25841122 ~ 25841958 (-)
G14515 NA non-coding downstream 565886 25835004 ~ 25837637 (-)
G14514 NA non-coding downstream 579888 25821749 ~ 25823635 (-)
G15174 NA non-coding upstream 39523 26446652 ~ 26446940 (-)
LOC117597861 NA non-coding upstream 41527 26448656 ~ 26452315 (-)
G15313 NA non-coding upstream 326233 26733362 ~ 26782469 (-)
LOC117598133 NA non-coding upstream 416106 26823235 ~ 26836478 (-)
G15438 NA non-coding upstream 714057 27121186 ~ 27121502 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 638829 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 698008 25547034 ~ 25705515 (-)
bcam bcam other downstream 916098 25395487 ~ 25487425 (-)
G14258 NA other downstream 999217 25400756 ~ 25404306 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other downstream 1136752 25262040 ~ 25266771 (-)
LOC113545420 c1h18orf63 other upstream 59682 26466811 ~ 26512794 (-)
f13a1a.1 LOC108263067 other upstream 337889 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 1038429 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 3141037 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 3390624 29797753 ~ 29814814 (-)

Expression


Co-expression Network