f13a1a.1 (LOC108263067)


Basic Information

Item Value
gene id f13a1a.1
gene name LOC108263067
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26745018 ~ 26757243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU18162
TACAGCACCTATGTGGGTGTTATAACCAATTCTGGAAAACAACGCTCTCAAAGAAATGAGAAGACAGACTTCTACGTGCTGTTCAACCCCTGGGCACCTATGGATCAGGTTTACCTGAGCAATGAGGAAGAGAGGCAGGAGTATGTGCTGAATGATGTGGGAATGATCTACAATGGAGACTATAATAATATTGGCAGACGACCG
>XM_034304597.1
TTGGGTACAGCTGCATACAGCATCCTTAACAGAGCATCCTATAGTTCAACGAGAAGGGACAGACCACCTGTGTACTGACACCATGCCGAAATTTGATCCATGTGAGAAAAACCGAGGCCGGTTGAACAGTCCAGTTTCCTGCATCAATGGAGAGAACAAGATCCTGCCTGAGTTTGAAGTGTTTCATGAAGCAACACCTCGGGCCCCCATGCCTACTGATGaaaatctcATTGTGATGAATATTAACATGTATGACAATATGAACAAGCTTGCCCATCACACTGATGCATACAGTCTCAGCAAACTGATCATCCGTCGGGGTCAAGAGTTCATCATGGGCATCGTCTTCAATCGCCCATTTAACCCAAAAAAGGACTTGTTTTTTATTGAGTTCCTGATTGGCAATAACCCCATCAGTACCCAAAAGACTTTAATCAGTATAACCTATGGTGGAAATAACCAGACCAATGATTGGAATGCCCGTGTGGTGGAGACCATAAAAACTGAGATTAAGATGGGCATCACACCAGCTGCTGACTGCATTGTGGGTCTGTACAGCACCTATGTGGGTGTTATAACCAATTCTGGAAAACAACGCTCTCAAAGAAATGAGAAGACAGACTTCTACGTGCTGTTCAACCCCTGGGCACCTATGGATCAGGTTTACCTGAGCAATGAGGAAGAGAGGCAGGAGTATGTGCTGAATGATGTGGGAATGATCTACAATGGAGACTATAATAATATTGGCAGACGACCGTGGAACTATGGGCAGTTTCAGAGTGGAATTCTGGAAGCTTGCATCTTCATCCTGGATTTTGGGAGAATGCCCCTCCAGTACAGAGGAGATGCTATAAAAGTGGTTCGGAAAGCCTCATCCATGATTAACTCGCTGGATGATGATGGGGTCCTAGTAGGTAGCTGGGGTGGAGACTTCAGCCTTGGTACTGCGCCCACAGCCTGGACAGGCAGTGTAGAGATTCTGCGCAAGTATTTTTCGGAAGGTGGACTGCCTGTCAAGTATGGCCAGTGTTGGGTGTATGCTGGAGTGTTCAACACTTTCCTACGGTGCCTTGGCCTTCCTGGGAGGGTGATTACCAACTACTGCTCTGCACATGACAACAGTGGCAACCTGAAGACTGACATTGTGCTGGACGAGGATGGCAGTCTGGACAGACAGGTCTCAGACACCATCTGGAACTTTCACTGCTGGAACGAGGTGTTTTTTAAGAGGACTGACATGCCAGAAAACTACTCAGGCTGGCAGGTGGTGGACTCCACTCCTCAGGAGATCAGTGAGGGTTATTACCGTTGTGGTCCTGCAGCTGTGATAGCCATCAAAGGTCAAACTCTCGGCTATTCGTTTGATGCAGGCTTTGTTTTTTCTGAGGTCAACAGTGATGTGGTTTACTATAAAAGAGACAAGTACGGAAACATGAATGTCATCTATGTGGACCGCACCTATGTAGGAAAGTTGGTTGTGACCAAAATGATTGGCTCCAATGATCATAACAACATCACAGACTCTTACAAATATGATAAGAGAGTGTCACGACGGCAGATACAGACGCAACTGAAAGACGCCAGTGTTTTGGATTCCATACTGGCAGGCAGTGATGTGCAGCTGTACACGCAGGCCACCAAAAACAACAAGGACATAATGTTAACCATGACCTTTAACAACCTGAGCAAGGGACCACGCACCATCACCTGCAAAATCACGGGCAAGGTGGAATACTACACTGGAGCCACTCGGACCCAGTTCATGTTTCTCACCCATGAGGTGGCTCTGCAGCCTTTGGAATCTAAGCAGGAGGTCATCATAGTAACAGCAGATGAGTACAAGAACTTCATCATAGGCCAGTCTTTCCTCTGCTTCGTTGTGTACGCCTTCATCCACGAGACCAACATGTCCCTCATCGGCATGGAATCGATCCATCTGGACACCCCTTCCCTTCTACTTGAGGTGAGCAAATTCTCTCAGGTTGGAAAGGATATGTTTGCGATCGTGGGCTTCACCAACACACTTGGCTACGACCTGACCAATGTCACTGTGCGCATGGAGGGAATAAACCTCTTTCCTGTGAAAACCAAAACgtacagCATCATTCAACAAGgttctaaaataaaatggattGAGTCCTTCAAGCCTCAGCAGGCCGGCACCAAGATGCTGGTGGCCTGCTTGGATTGTGCCACTCTGAGAGATGTGTGTGGACACCTGGAAATCGTCGTACATCCTGGACACAACTAAGCAGGAAGatgcacacacagaaagagagagagagagagagagagagagagagagagagagagagagacccaatgcattttctttcttttttgctcaTCTAATCACAATATTATAGATTTGTATTGATCTAAATGAATATCATACCAATTACATGTGGAGATTGCTTACAGAATCTTTCAGAAATAATGATAGTGATTCAGAAAAGTCtgcatagttacatttaatttgttatGACACCCaattaa

Function

NR:

description
PREDICTED: coagulation factor XIII A chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18162 False 204 lncRNA 0.45 2 26753741 26754050
XM_034304597.1 True 2496 mRNA 0.46 16 26745018 26757243

Neighbor

gene id symbol gene type direction distance location
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding downstream 4333 26735211 ~ 26740685 (-)
LOC113545413 lyrm4 coding downstream 168720 26530759 ~ 26576298 (-)
cul2 cul2 coding downstream 298917 26425384 ~ 26446101 (-)
pard3aa pard3,LOC108431315 coding downstream 325979 26038040 ~ 26419039 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding downstream 904075 25772592 ~ 25840943 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding upstream 93467 26850710 ~ 27020775 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding upstream 551773 27309016 ~ 27319449 (-)
LOC113545464 LOC108263316 coding upstream 1034865 27792108 ~ 27795840 (-)
ccny ccny,LOC108431590,LOC107588043,LOC107739127 coding upstream 1048571 27805814 ~ 27873609 (-)
pfkpa pfkp,pfkpa,LOC102201923,LOC100702375,LOC101472402,LOC102790125,LOC103143367,LOC103482255,LOC106911645,LOC106945829 coding upstream 1403434 28160677 ~ 28201075 (-)
LOC117597861 NA non-coding downstream 292703 26448656 ~ 26452315 (-)
G15174 NA non-coding downstream 298078 26446652 ~ 26446940 (-)
G15163 NA non-coding downstream 337889 26403523 ~ 26407129 (-)
G15111 NA non-coding downstream 430691 26310023 ~ 26314327 (-)
G15012 NA non-coding downstream 635185 26104667 ~ 26109833 (-)
LOC117598133 NA non-coding upstream 65992 26823235 ~ 26836478 (-)
G15438 NA non-coding upstream 363943 27121186 ~ 27121502 (-)
G15506 LOC108266640 non-coding upstream 620102 27377345 ~ 27378160 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding upstream 629048 27386291 ~ 27388809 (-)
G15840 NA non-coding upstream 1293565 28050808 ~ 28051046 (-)
LOC113545420 c1h18orf63 other downstream 232224 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 980324 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 1039503 25547034 ~ 25705515 (-)
bcam bcam other downstream 1257593 25395487 ~ 25487425 (-)
G14258 NA other downstream 1340712 25400756 ~ 25404306 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 688315 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 2790923 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 3040510 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 3475080 30232323 ~ 30333220 (-)
G16900 NA other upstream 3883455 30640698 ~ 30642974 (-)

Expression


Co-expression Network