G15506 (LOC108266640)


Basic Information

Item Value
gene id G15506
gene name LOC108266640
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 27377345 ~ 27378160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU18346
TCGGCGAAGGTGATAATTTCTGTCTGTTCACTGTTCTCGGCCTCGAGGCGTCCGTGAGGCTCGTCGTCGATCAGCACGCTGCCGTCCTTGGCCACGCGGCCCACATGGACCTTGCGGATGGCATTGAGCAGGGCAGCGCGGGGTACTGGGTGTGTGATGTTGGGCCGATCCTGCAGGTGCAGCATGCTGAGGATGTGCCTCTTCACCGCTTCCACCACATCCTGCtgcgcctcctcctcctccattaGTGCTTCTGTGCCACTCCTCCGCAGCCGTGCCATGGCACAAGAGGGGCAGTCCGATGGTGAAGAGGGCGCGGATGCCAAGGTGCCCGAGGTGGCCATGGCATTAAGTGAATAGCAGTGAGCCAGGAGCAGCAGTGCTACACTCATGGCAGGCAGGAGCGTCATCCTTGGAGCAGGAGGCTGAAGAAATGATGCAAACTGACCACAGCAGCCTAACTaactagaataaaaaaaaagaaaaactttttccTCTTGATCAAATGTCCCTCCAGGAACTACCTGTCTTGTAGCTGTGGATGTGTTCAGTCTGAtaggtttgaaaaaaaaaagaaaaaaaaaagttttgacctaaaacttttaaaaagtttGACCTACTAAAATCAAGTAAAGGATTGAAAAATGGTAATCCTTGTTGCTAAGAGGAGAGCTGCTGTGACGAGAGGTGATGACTGAAGAGGAAGAATAGTTCTGCCGGTTGCTTCACTTGTAGGtgttctttctccttttctctctcttgcttctgGGTCTCTGAGAAGTTTGGATGGGAAAGGCAGGCGTCTTGTGGATGAGC

Function

NR:

description
PREDICTED: inhibin beta A chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18346 True 816 lncRNA 0.51 1 27377345 27378160

Neighbor

gene id symbol gene type direction distance location
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding downstream 57896 27309016 ~ 27319449 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding downstream 356570 26850710 ~ 27020775 (-)
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding downstream 636660 26735211 ~ 26740685 (-)
LOC113545413 lyrm4 coding downstream 801047 26530759 ~ 26576298 (-)
cul2 cul2 coding downstream 931244 26425384 ~ 26446101 (-)
LOC113545464 LOC108263316 coding upstream 413948 27792108 ~ 27795840 (-)
ccny ccny,LOC108431590,LOC107588043,LOC107739127 coding upstream 427654 27805814 ~ 27873609 (-)
pfkpa pfkp,pfkpa,LOC102201923,LOC100702375,LOC101472402,LOC102790125,LOC103143367,LOC103482255,LOC106911645,LOC106945829 coding upstream 782517 28160677 ~ 28201075 (-)
trnar-ccu NA coding upstream 867182 28245342 ~ 28245414 (-)
trnam-cau NA coding upstream 867730 28245890 ~ 28245961 (-)
G15438 NA non-coding downstream 255843 27121186 ~ 27121502 (-)
LOC117598133 NA non-coding downstream 540867 26823235 ~ 26836478 (-)
G15313 NA non-coding downstream 594876 26733362 ~ 26782469 (-)
LOC117597861 NA non-coding downstream 925030 26448656 ~ 26452315 (-)
G15174 NA non-coding downstream 930405 26446652 ~ 26446940 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding upstream 8131 27386291 ~ 27388809 (-)
G15840 NA non-coding upstream 672648 28050808 ~ 28051046 (-)
G15842 NA non-coding upstream 707101 28085261 ~ 28086818 (-)
G15849 NA non-coding upstream 797524 28175684 ~ 28176846 (-)
G15852 NA non-coding upstream 827997 28206157 ~ 28206600 (-)
f13a1a.1 LOC108263067 other downstream 620102 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 864551 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 1612651 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 1671830 25547034 ~ 25705515 (-)
G14258 NA other downstream 1973039 25400756 ~ 25404306 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 67398 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 2170006 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 2419593 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 2854163 30232323 ~ 30333220 (-)
G16900 NA other upstream 3262538 30640698 ~ 30642974 (-)

Expression


Co-expression Network