G15849


Basic Information

Item Value
gene id G15849
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28175684 ~ 28176846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU18720
CAGCTATCATGTTCAGCCTATACAAAAAGCATCCTGTGGGCATAAGAAGCCTAGATTATgtgaatgtaaaatgtgtgtttaatgttctACTGACACAAGTAAAATATGAAAACTAGAGGGCATCAGCGTCCCACAGAACATCCTGCACAGTCTCATTCAAATGCCGTGTGAATGGGTCAGGTTCAGGGGGTCACAGCGCAAATAAACACCAAAGCTGCTGTGCTGTGACCTGTGACCCTGCACCCATGATCTTTCGCTGCGTCAGCCAGATTACACGGATTATCGGATTAGTTTAAACCAATAAGCCTCACTGTGTAGGCTGCAGTACTGCTCTGAGCTGACAGGGGGCAACGAACTGTTAGGGTCATACAGATAAACATGTCCAAAGTAATTATTTACTgattacattaattacatttgtCAATGGAGTAGATAAAATCTTAATCCACCATGAATCTGGATGTGGACAGCCAATCGAAAAAGAGAATTAAGAGCGCTTGGAGATTAAGCAAGGACCTGCATTAACTACCAGTTCCAACTTTCCATCCAGTATCGATTTCTACATTGATCCAGCAAGCGTGGATAATGTTGGTTTGACCCAGTCATGGATGAATTCACCCAGCTGAACACCGTCAATTAGTTAGATGCAATTCCCCATTACCAGACACTCTTTGCCCTGaacatgtgtttgtgtcttgTTTCAATTTAGAGCAGGGGTTACAAACATACCGCCCACAGGCTGGGACTGGACCGGTAAAGTTTCTAATCCGACACACCAAAATTAATTTAGAATACGAGTTCTAAAGTAAAATTGTCCTGTGGACTGCTATTAAAttgaaacattattattacattagtgagcaaaacagaaaaataagtaGCCGCCATTAATTCGGCTACCAACAAAATGATGTACTAATGATGCATAATTCTTCAAAGCCATAATACTGTATGACATCCACTAACCAGGGAGACACATGAAACCTCCAGCTGCATCTTTTCTACCTGCTTCTACATGCTGTTTCATGGGGTGGCGTAACAGACTCAGAGAAAAGCTCCCTTctacatgcatgagctcacagacacctactattggctagtgtcactgtgattgatagaggagagagagtatttCATCCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18720 True 1143 lncRNA 0.42 2 28175684 28176846

Neighbor

gene id symbol gene type direction distance location
ccny ccny,LOC108431590,LOC107588043,LOC107739127 coding downstream 302075 27805814 ~ 27873609 (-)
LOC113545464 LOC108263316 coding downstream 379844 27792108 ~ 27795840 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding downstream 856235 27309016 ~ 27319449 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding downstream 1154909 26850710 ~ 27020775 (-)
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding downstream 1434999 26735211 ~ 26740685 (-)
trnar-ccu NA coding upstream 68496 28245342 ~ 28245414 (-)
trnam-cau NA coding upstream 69044 28245890 ~ 28245961 (-)
trnar-ccu_1 NA coding upstream 74210 28251056 ~ 28251128 (-)
trnar-ccu_2 NA coding upstream 78649 28255495 ~ 28255567 (-)
trnar-ccu_3 NA coding upstream 79399 28256245 ~ 28256317 (-)
G15842 NA non-coding downstream 88866 28085261 ~ 28086818 (-)
G15840 NA non-coding downstream 124638 28050808 ~ 28051046 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding downstream 786875 27386291 ~ 27388809 (-)
G15506 LOC108266640 non-coding downstream 797524 27377345 ~ 27378160 (-)
G15438 NA non-coding downstream 1054182 27121186 ~ 27121502 (-)
G15852 NA non-coding upstream 29311 28206157 ~ 28206600 (-)
LOC117598396 NA non-coding upstream 240270 28417116 ~ 28434542 (-)
LOC113545501 NA non-coding upstream 259985 28436831 ~ 28453100 (-)
G16228 NA non-coding upstream 844791 29021637 ~ 29021844 (-)
G16291 NA non-coding upstream 1032561 29209407 ~ 29212056 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 622178 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 1418441 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 1662890 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 2410990 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 2470169 25547034 ~ 25705515 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 1371320 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 1620907 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 2055477 30232323 ~ 30333220 (-)
G16900 NA other upstream 2463852 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 2811277 30988123 ~ 31014649 (-)

Expression


Co-expression Network