G16629


Basic Information

Item Value
gene id G16629
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30149342 ~ 30149588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU19591
cagaagcgtccaatcactgctactgtatacagaatgactcagacagactctatcgaaaagcagaagcgtccaatcaccgctactgtatacagaatgactcagacagactctatcgaaaagcagaagcgtccaatcaccgctgctgtatacagaatgactcagacagactctatcgaaaagcagaagcgtccaatcaccgctgctgtatacagaatgactcagacagactctatcgaaaagcagaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19591 True 247 lncRNA 0.46 1 30149342 30149588

Neighbor

gene id symbol gene type direction distance location
myo3a myo3a coding downstream 38040 30067523 ~ 30111302 (-)
gad2 gad2,LOC107687529,LOC107675215 coding downstream 88747 30026423 ~ 30060595 (-)
apbb1ip apbb1ip,LOC107571746,LOC107687528 coding downstream 156231 29942300 ~ 29993111 (-)
trnaf-gaa NA coding downstream 160052 29989218 ~ 29989290 (-)
pdss1 pdss1,LOC106590306,LOC107675251,LOC107739114 coding downstream 224132 29918872 ~ 29925210 (-)
LOC117597070 NA coding upstream 39967 30189555 ~ 30190190 (-)
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding upstream 43463 30193051 ~ 30208074 (-)
ptchd3a ptchd3 coding upstream 189362 30338950 ~ 30344720 (-)
kmt2ca kmt2c coding upstream 250567 30400155 ~ 30561913 (-)
xrcc2 xrcc2 coding upstream 432429 30582017 ~ 30586690 (-)
G16566 NA non-coding downstream 196057 29873607 ~ 29953285 (-)
G16582 NA non-coding downstream 241918 29904478 ~ 29907424 (-)
G16291 NA non-coding downstream 937286 29209407 ~ 29212056 (-)
G16228 NA non-coding downstream 1127498 29021637 ~ 29021844 (-)
LOC113545501 NA non-coding downstream 1696242 28436831 ~ 28453100 (-)
G16709 NA non-coding upstream 25436 30175024 ~ 30175364 (-)
G16721 NA non-coding upstream 99876 30249464 ~ 30249677 (-)
G16747 NA non-coding upstream 181809 30331397 ~ 30331613 (-)
LOC117597677 NA non-coding upstream 230256 30379844 ~ 30382575 (-)
G16897 NA non-coding upstream 487495 30637083 ~ 30637584 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 334528 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 545104 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 2595836 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3392099 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 3636548 26466811 ~ 26512794 (-)
gpr158a gpr158 other upstream 82735 30232323 ~ 30333220 (-)
G16900 NA other upstream 491110 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 838535 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 852821 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 1435153 31584741 ~ 31611972 (-)

Expression


Co-expression Network