G16709


Basic Information

Item Value
gene id G16709
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30175024 ~ 30175364 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU19674
gatctactcctttgataaaaacactagtcgctaaatgctaggttaaataaataagtcttcaacctcgacttaaacactgagaccgtgtctgcttcacgtacattaactgggagactattccataattttggggcttggtaagagaaagctctgccccctgccgtggttttggcaacgcgtggtactgatagacagcctgcatccttagagcgaagtaggcgcggcggaacgtaaggtactaacatatcgcttaaatactgcggagcgagaccgtttaatgctttataggttaggagtaatattttaaaatcgatgcggaatcttactgggagccagtgtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19674 True 341 lncRNA 0.44 1 30175024 30175364

Neighbor

gene id symbol gene type direction distance location
LOC117597071 myo3a coding downstream 11327 30115305 ~ 30163697 (-)
myo3a myo3a coding downstream 63722 30067523 ~ 30111302 (-)
gad2 gad2,LOC107687529,LOC107675215 coding downstream 114429 30026423 ~ 30060595 (-)
apbb1ip apbb1ip,LOC107571746,LOC107687528 coding downstream 181913 29942300 ~ 29993111 (-)
trnaf-gaa NA coding downstream 185734 29989218 ~ 29989290 (-)
LOC117597070 NA coding upstream 14191 30189555 ~ 30190190 (-)
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding upstream 17687 30193051 ~ 30208074 (-)
ptchd3a ptchd3 coding upstream 163586 30338950 ~ 30344720 (-)
kmt2ca kmt2c coding upstream 224791 30400155 ~ 30561913 (-)
xrcc2 xrcc2 coding upstream 406653 30582017 ~ 30586690 (-)
G16629 NA non-coding downstream 25436 30149342 ~ 30149588 (-)
G16566 NA non-coding downstream 221739 29873607 ~ 29953285 (-)
G16582 NA non-coding downstream 267600 29904478 ~ 29907424 (-)
G16291 NA non-coding downstream 962968 29209407 ~ 29212056 (-)
G16228 NA non-coding downstream 1153180 29021637 ~ 29021844 (-)
G16721 NA non-coding upstream 74100 30249464 ~ 30249677 (-)
G16747 NA non-coding upstream 156033 30331397 ~ 30331613 (-)
LOC117597677 NA non-coding upstream 204480 30379844 ~ 30382575 (-)
G16897 NA non-coding upstream 461719 30637083 ~ 30637584 (-)
LOC117595754 NA non-coding upstream 462485 30637849 ~ 30640024 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 360210 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 570786 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 2621518 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3417781 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 3662230 26466811 ~ 26512794 (-)
gpr158a gpr158 other upstream 56959 30232323 ~ 30333220 (-)
G16900 NA other upstream 465334 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 812759 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 827045 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 1409377 31584741 ~ 31611972 (-)

Expression


Co-expression Network