G16721


Basic Information

Item Value
gene id G16721
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30249464 ~ 30249677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU19688
GTGGAATGGTCACATACAtatgtagaaatgataacgtattagaacgagcacattaatataaacctgtgatttgtagctgcactgttgtcccagaattcagccacagcgacATCCGATGGATTATTCTCTGCCCTCTAGACATATGACAGAAAACAAGCACACATCAGCCATCTCGTCTTGTTTAATTGCTTGTTTTGACTCACCCTGACCTGGC

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU19688 True 214 lncRNA 0.42 1 30249464 30249677

Neighbor

gene id symbol gene type direction distance location
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding downstream 41390 30193051 ~ 30208074 (-)
LOC117597070 NA coding downstream 59274 30189555 ~ 30190190 (-)
LOC117597071 myo3a coding downstream 85767 30115305 ~ 30163697 (-)
myo3a myo3a coding downstream 138162 30067523 ~ 30111302 (-)
gad2 gad2,LOC107687529,LOC107675215 coding downstream 188869 30026423 ~ 30060595 (-)
ptchd3a ptchd3 coding upstream 89273 30338950 ~ 30344720 (-)
kmt2ca kmt2c coding upstream 150478 30400155 ~ 30561913 (-)
xrcc2 xrcc2 coding upstream 332340 30582017 ~ 30586690 (-)
trnah-gug NA coding upstream 383389 30633066 ~ 30633137 (-)
LOC117595698 NA coding upstream 536286 30785963 ~ 30789410 (-)
G16709 NA non-coding downstream 74100 30175024 ~ 30175364 (-)
G16629 NA non-coding downstream 99876 30149342 ~ 30149588 (-)
G16566 NA non-coding downstream 296179 29873607 ~ 29953285 (-)
G16582 NA non-coding downstream 342040 29904478 ~ 29907424 (-)
G16291 NA non-coding downstream 1037408 29209407 ~ 29212056 (-)
G16747 NA non-coding upstream 81720 30331397 ~ 30331613 (-)
LOC117597677 NA non-coding upstream 130167 30379844 ~ 30382575 (-)
G16897 NA non-coding upstream 387406 30637083 ~ 30637584 (-)
LOC117595754 NA non-coding upstream 388172 30637849 ~ 30640024 (-)
LOC117596846 NA non-coding upstream 513908 30763585 ~ 30764477 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 434650 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 645226 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 2695958 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3492221 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 3736670 26466811 ~ 26512794 (-)
G16900 NA other upstream 391021 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 738446 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 752732 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 1335064 31584741 ~ 31611972 (-)
G17630 LOC108267341 other upstream 1750948 32000625 ~ 32052554 (-)

Expression


Co-expression Network