G17000


Basic Information

Item Value
gene id G17000
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30766189 ~ 30766709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU20022
GCAACACGGCAGCAGTTTAACTGCAAGTGCTTcaacacacagtgtttcagtTTTGGCCAGAAGGTACCAACTGCTGTGCCACAGCCAGCCAGTGAAGGGAATCCACAGTCAGCCAGTGAAGGGAATCCAGTGGGGAAGTCCAGAGCTGGTTGGGCAGTGGTGCATGCTCAGATATGATCAAGAGCTGTATCCAGGCATCATCCTTAGCACAGATGAAACACATGTGCAAGTGAAATGTATGCATCGTGTTGGGCCAAACCGATTCTTCTGGCCGGCTGGGGATGATATCCTCTGGTACCTGTTTGAGGATGTACTTGAAATCATTCCACCACCAAAGCCTGTGACAAAGCACCATGTTGAGATCTTGAAAGAGTTTATAATGTTCTAATGTATActatgttattgttgtttttcctgcAGTCGGGTTAATAAAACTCAGTTCAATTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20022 True 450 lncRNA 0.46 2 30766189 30766709

Neighbor

gene id symbol gene type direction distance location
trnah-gug NA coding downstream 133052 30633066 ~ 30633137 (-)
xrcc2 xrcc2 coding downstream 179499 30582017 ~ 30586690 (-)
kmt2ca kmt2c coding downstream 204276 30400155 ~ 30561913 (-)
ptchd3a ptchd3 coding downstream 421469 30338950 ~ 30344720 (-)
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding downstream 558115 30193051 ~ 30208074 (-)
LOC117595698 NA coding upstream 19254 30785963 ~ 30789410 (-)
LOC113547558 LOC108268894,LOC108264971,LOC108273546,LOC108270747,LOC108257668,LOC108270753 coding upstream 203308 30970017 ~ 30982915 (-)
ntng1a ntng1,LOC102781425 coding upstream 399717 31166426 ~ 31312036 (-)
prmt6 prmt6 coding upstream 559205 31325914 ~ 31327457 (-)
arhgap29a arhgap29 coding upstream 1165760 31932469 ~ 31991048 (-)
LOC117596846 NA non-coding downstream 1712 30763585 ~ 30764477 (-)
LOC117595754 NA non-coding downstream 126165 30637849 ~ 30640024 (-)
G16897 NA non-coding downstream 128605 30637083 ~ 30637584 (-)
LOC117597677 NA non-coding downstream 383614 30379844 ~ 30382575 (-)
G16747 NA non-coding downstream 434576 30331397 ~ 30331613 (-)
G17025 NA non-coding upstream 75256 30841965 ~ 30889214 (-)
LOC117598443 telo2 non-coding upstream 232771 30999480 ~ 31001678 (-)
G17222 NA non-coding upstream 262747 31029456 ~ 31029677 (-)
G17265 NA non-coding upstream 330123 31096832 ~ 31097965 (-)
G17277 NA non-coding upstream 360024 31126733 ~ 31130151 (-)
G16900 NA other downstream 123215 30640698 ~ 30642974 (-)
gpr158a gpr158 other downstream 432969 30232323 ~ 30333220 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 951375 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 1161951 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 3212683 27445558 ~ 27553506 (-)
telo2 telo2 other upstream 221414 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 235700 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 818032 31584741 ~ 31611972 (-)
G17630 LOC108267341 other upstream 1233916 32000625 ~ 32052554 (-)
G18097 ift140 other upstream 1823193 32589902 ~ 32596805 (-)

Expression


Co-expression Network