G17422


Basic Information

Item Value
gene id G17422
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 31718684 ~ 31734954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU20532
TCCAGCAGGTCCCGGGGGTCCCTGAGGTCCACCACGGCCAGGTAAACCAATTGGACCTGCAGAACCGGCAGCTCCTCGCTCACCAGGAGAGCCCTAAACACACCAAACATTCAACAGGTAAATCTCATGATGTTTCAATGTTCAGATATTCACAAAAAATTGTAGCATAAGATCGTTATTGCAATTGAAGTGATCTTGGCCAGCTGGAGAACATCTCAGTTCTGAACATGTGACCTAGAACATGCCAAGTCACTGGGGTTGTACTTATTTCTCtaatacctttaatatgtattgaTCATCTCATAACGTGGATATAGTGacctttaaaaaatgatttaaggtacataattggcgcattagagtaaagctttaaacgTACGCTATATCCAACTTTCTAGATAAAActcacactaaaggtacaaaacgTGTACGATTCAGAGTACCACCAGTTTAGATACAGTTtagacacatttcttttttgtgtatCGATGGTGTTGATCGATGGTCTTACATCACTCTTTATCCGACCCACCCAACTCAAGCAGTTCTGCTTTGGCAATGGATctgctgagatttgaactcttGCACTGATGAtactcttcttttccttttttttttaactttaaatccTAAGTACTGAATCTTGGCGTCTTTCCCACCAGCTATGCCAAGCACTCAGCACTGAATTATGTACTCAGTAGGCAAGGTGTATGAAGGGAAATTAAAGCTCTGGTGGTGTTCTAAAGCAGTGAAAGTTTCTGTCCTTGGCTTTCATCACTCGTGCTTTGGACAGAAATGcttctaaaacaaacaaaaaaaatgcctaAACAAACTACATAAAGCCTGGGTTGCTCGAGGCAGGAGTTTCTTATCAATGTGCACGCCGTCCATCCAACAGTGAAGACTGAGGGAGCAAACAGGGAGTGTTAATAAGTGAAAGCTGGTATTTAattgatgttttttaaataaatgatcaggCTTTGACAGGTTCTTCACAGTTCTTCTTTAAAAACAACTGCTTTCAGTCTGTTGCtagaaataatattaataaaaaaaactaaacatatCTGCTCACTAAGCCTGATGATTTAGTGTCTGAGATCAATAGTGGACCCAGGACTGAGCCTTGGGGAACCTCACCTGTAGTGAGGCTCTTAAATCATAGCATGGGTgggtttctcttttttgttttgttttaactgGTCTGGTAAAGGTTCTAATCCAGTCCATCAAATTTCAAATccatgttaaattaaattacaaatgttttgtggaacataattgaattgaaagatgAGAAAAACGAGCTAGTCTCAAACGTCGCAAAAGGCTATAAACTCGGCTACTGaaaaaatatgctaatgatgcatattttatgttttttaatttgctcGTTTCAGATAAATTCTGACACATCaacacatttaagaggagtTGTTGATGTGTTATTGGTCTACTGCGTTTGCTATAAGTGTAAACTAGTCTGTTACTTAAACTACTCTGTTAACTAAAAAGAGTTTGACTTTGTCTAATTTAAATGTTCTGTAGTGTCACCAAAAGGAAATTATATAAAGGAGggtgaaatgaaatatttcatacaaACTCTTCTCAAATATGTTCTTCTGTATAAATATGTTGCTACTGAGAAGAAGAACAGGTGTCCTGCATGTAAACTGCAATGATAAGTGGTGATTGTggtgttgccatggaaacattatgatgtattttttttgtctgccaACTAAAAAGTGGATGGTGGTTCAAAGAAGAGCTTGGGCAGTCATAGCACAACCAATCAGGACAGTTAGTCACCTTGagttacctttttttaaatacaagttATCATATATCAAGTGATTAGCTATCTAGATGAaggatatataaataataaacaactatTTTCACTGAGATGAAGTTTAAATACAAGATGTCCAGTGATCATTTTGTAAAAAACAAATTCAACTTATGCTTTATTCCAAAGCCACAGCTACTGGGAAAAGTTGGGAAAACCCTTAGAAATACTTGATAAAATGTTGTAGTGTCAATTTCCATTGAAAACTCAATGGTTTGTAAACTTCGAAGCTCCTGCTAAATCCCACATCACTCCTGGTTCCTCACGAGTTCCTCACGATGACTTGCCTGCACCCTTCTCCTCCTTCTGAGTGCTCTTCTGACTATCTGAAGGTTTTGGAAGCTTGCGAGAAAGGGAGCATAAACCAGCCTTGACTACAGGAAAGCCATGTATGAGGTGGTGTGAGGATCTCGGAGAGAAAGACCAAATCGAATTGACAGTTTCAATCAAACCCAATGTTCACAACAGCCCCAACTCTGTCTAGACACAGTGCGTGGGAAGTCTGCTTCATGATTAATCCtttgaaagagtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgcattaaatgTGCCATTTAGTTCAGCTAAAGCAGGGTGAGTCAGTGTAGTTAGAAATCCACCTTAGATCTAATGATCAATTATTGGAGGTGGGTAAGGCAGCCATGTCACACTATCATTACTCTCCTCTCACATCCATTCCTCTTCCTCTAATCTCTAAGGAAAGCTGAATTTATAGACTTCATACAGGTGCAAATGAGTCCTTTATCTCTCTCCATACGAAAGTCAACTCGATGACAATTCAGCTGGCTGTACTAATCTAGCATGGCCCATAGAAACCGCAATTACCGAATAATAATACTTATCTTCCTTCGCTTTACAGAGGAACACATCATCTATGAACAGAAAGTCATTTTAATTCAGCTTTCCATGAATACAATACGAGCAGTCCATCAAATCCAACTTTCAAACTGCGGTGTAAAACTATTACCAATATCCCCTTTTCAATTCATTACTCCATCATTTCTCTGGCTTCTTCTCCCACTTGTAAACTATGTTTACTTCCTGATTCATTTGTCTTCTCATATCCTCTGTGTGTACCTGTTCttcgcgaagtcttgccaattgtATTTGTTTGATTCTTGTTATCTTGTTCTACACTTTTTTCATTCTGACCCGTTCCTGTTTATTATTGTATGTTTATGGATAGGTCTACGATTATCTGTACTGCAGccttgattttttgtttttttgcaaactgaaattaaaattcTAAGAAACAAtccaataaaatacaaactctaacacacacacacaaattgatTCATTAACAGCGTGGTGATTAGCTAATGAGGTGGATCGGGCGTGATAAATGAGGTTAAACGGTAAACTCCACGCTATCGCAGTCTGACAGGAAAAAAGTGCTGACCACATAGTTACCACGCGGCCGTCTACACGTCTACACGTCATTCTGAATCACTATGGATCCtgttaaatatgcaaatgagatgcaAATACAACATGCGCTGCACTGTGTAGCTAATAGAGATGCGAATCTTAATTAAAACCTCCGTGATTAAGAGGATGTGCGGCATGTCACTGGCATGATTTCATGTCTCCGTTCGAGCGTGTTTTCATGCAACGCTACGATTCACAGGCAAGAAGCAAGAGCTGATTACACAGAAATGATTAGCACCTACTTCAGACGTCTAAATCTCACACAATATTACAAATCACGTCATGTTTTTGGATggatatgaatttaaaaaaggtttccataggttattaaaacaagaatagaaattaaaaatatcagagAAACAAGAAAGCATGAAATAAAGAGAAACGAAATAGAGAACATTACAAAAAGCTAATAACACAATTAGCCAAAATGACCTCTATACTGACACTGCTTCATCAAATATCTTTTTGTGCAACACTTCGAGACAtgatattacagaaaaataatcactgaaatAATCACcaaagtttatattattttatataacagcatgtcgttcagtgttttattcctcttatccaacagcaatttgctaacattaacaacttttaaaaaatgcattaaagaatgatactttttttatccatttatagttacattaaagtTTGTGGAACATTGCTAAGTCTGAGAGAAACCAGATGGTTTGTCTTGTTTTCACGGTTCCTGTGTCACGTTACTGTATGGTGCGAAGGCCTAGCTAGTCAAAAGTCATTATCCTATATATTAGCTTAAACCTCAATTTCCATATtttccagttgcctagcaacagcgtTATCCCAAATTCAACCACTTAAACAGCGTGTGCATGGTCACAAATTTAACGAGATGTATGATGAATTGGGTGCATCTAGGCATAGTTCTGGTTGGTGCAACTTTTCCTGTTTAGCCGTGAAATCAGAAATGATCCCAATCCAAATGAAGTCCCTATTCCCTTCCACTTATCAAATTTTACATCCTGTGCTAAATACATGTATATTCTTTTAATTTGAAAGTGGTCTAATTATTGCTATTTCTTTAAAGAGCAAGATAGAGTAGCTGAAACACCTACAGAACAtaaattattcttattcttatccttattcttattattatttgatatattATTTGAAATGGGACAACCGTGCACCGCTGCAGCATGTATTATTCCATGAACAGGTAGCAAAGGGAAGTGAGGACGGGATGTTTTTCAGAATATGAAATGCACCTGATGCTGTACTAATTAAATCCCTTCATACATCTGGAGACGAATAATAGATGGTTGGCTCTGGTCTACGTGCAAAGCTAAGGTGTAGACCCTGTGTAGCACTGCATTATGGGTAGCACTTACTCTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20532 True 4713 lncRNA 0.37 3 31718684 31734954

Neighbor

gene id symbol gene type direction distance location
prmt6 prmt6 coding downstream 391227 31325914 ~ 31327457 (-)
ntng1a ntng1,LOC102781425 coding downstream 406648 31166426 ~ 31312036 (-)
LOC113547558 LOC108268894,LOC108264971,LOC108273546,LOC108270747,LOC108257668,LOC108270753 coding downstream 735769 30970017 ~ 30982915 (-)
LOC117595698 NA coding downstream 929274 30785963 ~ 30789410 (-)
trnah-gug NA coding downstream 1085547 30633066 ~ 30633137 (-)
arhgap29a arhgap29 coding upstream 197515 31932469 ~ 31991048 (-)
trnar-ccg NA coding upstream 284141 32019095 ~ 32019167 (-)
trnar-ccg_1 NA coding upstream 343589 32078543 ~ 32078615 (-)
trnar-ucg NA coding upstream 350775 32085729 ~ 32085801 (-)
trnar-ccg_2 NA coding upstream 351523 32086477 ~ 32086549 (-)
G17418 NA non-coding downstream 9636 31707074 ~ 31709048 (-)
G17408 NA non-coding downstream 18245 31640151 ~ 31700439 (-)
G17409 NA non-coding downstream 39995 31675220 ~ 31678689 (-)
LOC117598001 NA non-coding downstream 268143 31413757 ~ 31450541 (-)
G17347 NA non-coding downstream 356223 31362230 ~ 31362461 (-)
G17425 NA non-coding upstream 2875 31737829 ~ 31739449 (-)
G17426 NA non-coding upstream 8262 31743216 ~ 31746131 (-)
G17441 NA non-coding upstream 83304 31818258 ~ 31818637 (-)
G17498 NA non-coding upstream 163603 31898557 ~ 31898756 (-)
G17631 NA non-coding upstream 318829 32053783 ~ 32097778 (-)
rnpc3 rnpc3 other downstream 106712 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 704035 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 715375 31002409 ~ 31003309 (-)
G16900 NA other downstream 1075710 30640698 ~ 30642974 (-)
gpr158a gpr158 other downstream 1385464 30232323 ~ 30333220 (-)
G17630 LOC108267341 other upstream 265671 32000625 ~ 32052554 (-)
G18097 ift140 other upstream 854948 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 1164915 32899869 ~ 32955703 (-)
G18432 NA other upstream 1836425 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 1837799 33572753 ~ 33616366 (-)

Expression


Co-expression Network