G18143


Basic Information

Item Value
gene id G18143
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32707456 ~ 32708126 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21352
taatgcattagagAGGGATGAGACGGATCAGAGAGGGTTTATAAAAGAACAGGAAGCGGAATAAGGAGAAGAATTATACATGGTTATATTGAGTCCTATATTATTCAGGTCATGACACTGATCTCTAACCTTCTGCTCCTGCAGGAGTGTGGGGGAGTTCATCTCCATCGTCTGTCTGGGGAAAatcatgctaacacacacacacacacacacacacacacacagtctagcAGTACAAGTGGACACTACACCTCGCCTAACAGGTCGAATTCAGTCCATTTTTCTCCCCCAAACAGAGTGTAAACACTACAAAGACCATAATGCACTGGGGCACAGGGAACATGGCGTAAGGCAGTGCTGCTCGCTCCCACTGACAGGGCTGCGGGAATAAAGAGCAGTGACGCGACGCGACACTGCACtcgtctgtgtatctgtgtatctgtaaaTAAAAACGAAACGTAAAAGCCGAAGGAGGGGTCAGGGGTCGGGGAGGGAGGGTTAGAGGGTAGAGGATGTACGCATAGCCGAGTGACACACAGTAGTTCCCATGGTAACTGTGCCAGAGGGGGTGGTGGGTGACGGCCCTCAGAGCTCTCCGGACTCTCTGTCTCCGGAGCGACGAGACTCCGCCCTCCCGTTAAGACGGTCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21352 True 651 lncRNA 0.51 2 32707456 32708126

Neighbor

gene id symbol gene type direction distance location
fam234a fam234a coding downstream 10745 32687597 ~ 32696711 (-)
tmem204 tmem204 coding downstream 84722 32610019 ~ 32622734 (-)
LOC113547549 NA coding downstream 132025 32562537 ~ 32575431 (-)
LOC113547553 NA coding downstream 168109 32521620 ~ 32539347 (-)
enkur enkur coding downstream 461845 32238940 ~ 32245611 (-)
ccdc78 LOC108269459 coding upstream 168344 32876470 ~ 32895850 (-)
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding upstream 215741 32923867 ~ 32953931 (-)
LOC117597388 NA coding upstream 250495 32958621 ~ 32972206 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 542721 33250847 ~ 33284417 (-)
fgf21 LOC108263130 coding upstream 611738 33319864 ~ 33326553 (-)
G18136 NA non-coding downstream 56671 32650224 ~ 32650785 (-)
G18133 NA non-coding downstream 62141 32641355 ~ 32645315 (-)
G18087 NA non-coding downstream 98895 32538754 ~ 32608561 (-)
LOC117597779 NA non-coding downstream 349702 32355196 ~ 32357754 (-)
G17850 NA non-coding downstream 353382 32353860 ~ 32354074 (-)
G18144 NA non-coding upstream 2575 32710701 ~ 32710972 (-)
G18157 ptx4 non-coding upstream 91557 32799683 ~ 32808266 (-)
G18176 NA non-coding upstream 214876 32923002 ~ 32943136 (-)
G18170 LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753 non-coding upstream 235610 32943736 ~ 32951342 (-)
LOC117597511 NA non-coding upstream 235834 32943960 ~ 32945004 (-)
G18097 ift140 other downstream 110651 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 654902 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1095484 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1692807 30988123 ~ 31014649 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 191743 32899869 ~ 32955703 (-)
G18432 NA other upstream 863253 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 864627 33572753 ~ 33616366 (-)
G18848 NA other upstream 1306922 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1558178 34266304 ~ 34270306 (-)

Expression


Co-expression Network