G18170 (LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753)


Basic Information

Item Value
gene id G18170
gene name LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32943736 ~ 32951342 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21383
TCTCAGTTTAATGGGTGCTAAAACTATAACACAGTCTTCTGTGCAGTATAGTTCCCCCTGAGCAAGCAAGATGTTTGATGAAATTGTTGACATTTTACAAAATCTTGAGCTCAAAACCGCTAGTAATAGCTGAGAGATTTAGATTCCACAAATGGAACGAGTCAAAGCATGAAGGCATTTCCAAATACACTGCATAATTGCATAAACTTTCCCAGTACTGTGACTTTGGAGATGCAGTAAGAGACAGGCTTGTATGTGGCATGCATAATCAAAGCACTCAAAAGAGACTACTGTCAGAAAGAGACCTAACCCTTGATATTTCATCGTTTCTCCTCCAGACTTTGTTACTGTTATCTCagagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtaacaatattaacctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagatactgaggctgtatcgctgtaatctcacagagaaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtaagaattataaactgcaggattcaggtgtgaagctgctctctgctggactggagaatccacactgtacactggaaatactgaggctggaaagctgcagtattacaggtgaaggttgtgctgctctggtttcagctctgaagtcaaacacctcatcacacctgagagaactgaatctgaactacaataaaccaggagaatcaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagaaactgCTaTTTAAGCCGCTTtaattctgatctgatctgagtctcacacacagaggatgatgaggataaactcttacagtacaaagtgtttgaaaaacatgatcatTTAGTGATAATCAGATGGTGTACAACATGTCAGCACTTCTGCTTCTCTAgttgtttgtaaaaatgcaccagctgagataaataaactttaactgtacagtaatgaatcttttcttattaacagcaaaacagaaactgttaatgcacttataatgtcatttaatagttttgtatatacagtatgttcatgtttttccatttacatgtagcagaaggaaacatttatgtttaaaacacattataaatatctTATAGTATCAGTTCAATGCAGTAATTTGGTCATTGCTCaaagttatacactgtttatacactgagttaAAGTAATTT
>TU21386
TGCAGGTCTGGACTGCATGATATAGCATCaatgttgtattttataatgaaaaactCAATCCTAGAAAATCTGCAGACCCAGATGGTTTAGATGCTTCCTTCTTAAACCTCCTGCTGCTAAAAGGTTGAGAACCCTGTCATCTTAATAACTATAGGCCTACACCCAAATTATCAGCTCTTGCCCAAACACTAGAACTTTTAATAAGCGAACAATTTAAAGGAACATTTATAGAGTGAATACATGACTACATGAACACCAGTCTGCTTTTAGAAAACGCTATAGCACAACTACTGCTGCTGTGAAAGTAGTTAATGAGTCCATGTTTTTACATTGActttgtgctgctctgtgtgacATTACATCCTGCTGAtgtttacacactgcactgattttATGCCTTGATTTTGTGAGTGAACCAGAATCATGAAAATCTGGCTTTAATCTGAGGTTTGTGGTTGTCAGAGGCATCTTGAAGACCAGTTATGTTAAACTTGGTTGTTCGTCACAACCTTGCGATCACTTTATACAGCCGACAAAATCTACTAGACATTAAACTTCCATCTGCTACCATCAGAGACACTCCGGTCCTCGGACTCAAGTGAGCGGCCAGTCCGACAGGAAGTGCCCGTCGCCGGCGTTGGGAACGTAAACAAAGCCGGGgctgcgtGACTGTAATCTCAGaaaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgacaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacactgaggtcagatcatcactttcacattttgtttatttgattgtcattattacagtataaatgttggctaaataaatcatgatttttttcaaaattaaatgaGGACAAGACAGAAATGCTTGAAATGAAGTTAGAAATCTTGGTGTAATTCTGGACTcgtttttatcttttaaaccagaaattaataacattactaaaaCTGCATTCTATAATTTATTGAATATAGCACGGGTCAGACTTTATGTCCAGTCACAAGATGCCAAGAAATTGATCCATGATTAGTTTTTTCTCACCTTGAATATTGTAATGCATTGTAATGATAAGCGGCGATCCAAGAgcactgatatttaatataacagcacgggtacatttcactgtgtgtatcactccgcttgactgtgttcactacataaaacTCTAATTCTAGCACAGAaacattcagaggaaagcagAGCGTCAGCGAGAGGAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21383 False 1293 lncRNA 0.39 4 32943736 32949185
TU21386 True 1300 lncRNA 0.40 2 32949295 32951342
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Neighbor

gene id symbol gene type direction distance location
ccdc78 LOC108269459 coding downstream 47886 32876470 ~ 32895850 (-)
fam234a fam234a coding downstream 247025 32687597 ~ 32696711 (-)
tmem204 tmem204 coding downstream 321002 32610019 ~ 32622734 (-)
LOC113547549 NA coding downstream 368305 32562537 ~ 32575431 (-)
LOC113547553 NA coding downstream 404389 32521620 ~ 32539347 (-)
LOC117597388 NA coding upstream 7279 32958621 ~ 32972206 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 299505 33250847 ~ 33284417 (-)
fgf21 LOC108263130 coding upstream 368522 33319864 ~ 33326553 (-)
LOC117597600 LOC108261633,LOC108268894,LOC108273545,LOC108263642,LOC108270753,LOC108263117,LOC108410737,LOC108261292,LOC108412218 coding upstream 477582 33428924 ~ 33453389 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 510436 33461778 ~ 33472267 (-)
G18176 NA non-coding downstream 600 32923002 ~ 32943136 (-)
G18157 ptx4 non-coding downstream 135470 32799683 ~ 32808266 (-)
G18110 NA non-coding downstream 214698 32684517 ~ 32729038 (-)
G18144 NA non-coding downstream 232764 32710701 ~ 32710972 (-)
G18143 NA non-coding downstream 235610 32707456 ~ 32708126 (-)
G18182 NA non-coding upstream 29733 32981075 ~ 32981310 (-)
G18197 LOC108273185 non-coding upstream 62438 33013780 ~ 33061512 (-)
G18224 NA non-coding upstream 181966 33133308 ~ 33133510 (-)
G18231 NA non-coding upstream 198918 33150260 ~ 33150876 (-)
G18275 LOC108277266 non-coding upstream 220964 33172306 ~ 33172879 (-)
G18097 ift140 other downstream 346931 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 891182 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1331764 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1929087 30988123 ~ 31014649 (-)
G18432 NA other upstream 620037 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 621411 33572753 ~ 33616366 (-)
G18848 NA other upstream 1063706 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1314962 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 1332724 34284066 ~ 34998396 (-)

Expression

G18170(LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 150.
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G18170(LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753) Expression in each Bioproject

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G18170(LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
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Co-expression Network