G18176


Basic Information

Item Value
gene id G18176
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32923002 ~ 32943136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21396
ctccaacaaaaacaatgtacagTGTGAGGCATCATGGCAACAACAAACACGGTGAACTTATTTCCCACAAAGGTTGTAGGTCATACATCACTAATGAGccataaataatctgctttcttttaacattttacacaatgaacAGTAAATGGCTCTGAGTCCATATAGGAGGCAGAACATGAAgacttcatttctttatttctgtaagtgGAATCACCTACACTGTTACCAAATAAGTGTTTGGGTGTGGAGggtatttattattgataagtgcagagtgtttgtgtgtgtgttgtgtgtatgtaagtaGGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21396 True 312 lncRNA 0.38 2 32923002 32943136

Neighbor

gene id symbol gene type direction distance location
ccdc78 LOC108269459 coding downstream 27152 32876470 ~ 32895850 (-)
fam234a fam234a coding downstream 226291 32687597 ~ 32696711 (-)
tmem204 tmem204 coding downstream 300268 32610019 ~ 32622734 (-)
LOC113547549 NA coding downstream 347571 32562537 ~ 32575431 (-)
LOC113547553 NA coding downstream 383655 32521620 ~ 32539347 (-)
LOC117597388 NA coding upstream 15485 32958621 ~ 32972206 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 307711 33250847 ~ 33284417 (-)
fgf21 LOC108263130 coding upstream 376728 33319864 ~ 33326553 (-)
LOC117597600 LOC108261633,LOC108268894,LOC108273545,LOC108263642,LOC108270753,LOC108263117,LOC108410737,LOC108261292,LOC108412218 coding upstream 485788 33428924 ~ 33453389 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 518642 33461778 ~ 33472267 (-)
G18157 ptx4 non-coding downstream 114736 32799683 ~ 32808266 (-)
G18110 NA non-coding downstream 193964 32684517 ~ 32729038 (-)
G18144 NA non-coding downstream 212030 32710701 ~ 32710972 (-)
G18143 NA non-coding downstream 214876 32707456 ~ 32708126 (-)
G18136 NA non-coding downstream 272217 32650224 ~ 32650785 (-)
G18170 LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753 non-coding upstream 600 32943736 ~ 32951342 (-)
LOC117597511 NA non-coding upstream 824 32943960 ~ 32945004 (-)
G18182 NA non-coding upstream 37939 32981075 ~ 32981310 (-)
G18197 LOC108273185 non-coding upstream 70644 33013780 ~ 33061512 (-)
G18224 NA non-coding upstream 190172 33133308 ~ 33133510 (-)
G18097 ift140 other downstream 326197 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 870448 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1311030 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1908353 30988123 ~ 31014649 (-)
G18432 NA other upstream 628243 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 629617 33572753 ~ 33616366 (-)
G18848 NA other upstream 1071912 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1323168 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 1340930 34284066 ~ 34998396 (-)

Expression


Co-expression Network