G18275 (LOC108277266)


Basic Information

Item Value
gene id G18275
gene name LOC108277266
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33172306 ~ 33172879 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21511
gacagtagtgaagctacaaatcacatttttttagtTACCTGTGATTGTTGGTGATgtccagatgtgtgtgtatggacagCAGAGTGTTTTTCAGAAAGCTGATCCTCTTTCTTTCCTGCTCCTGTGATTGGTCAAACACTGACTCCATTTCCTCCATGTAGCGTGGAGTGTAGCCAATCAGATCATCCAGAACCTTCACATAGTGTTCACGAGCgtGTTCTCTGTCCTGTCCCGCCGTCTTCTTGGCCTGCTGGATTTtggcgagtgtgtgttcattttggTTGACACTGTTTTTGGCCTGACATTCTTTATTCAACACATTCTGCTCCTTCTGACACGATTTATGATAGGCCCgtcgtgctttctccagctacacacacacacacacacacacacattgcagacTGTTATGAATAGCAAATTACCATCTGTGCCATCTCCAATCCTAGCTACTGTTCCTAAtagaacattaacattttta

Function

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21511 True 481 lncRNA 0.44 2 33172306 33172879

Neighbor

gene id symbol gene type direction distance location
LOC117597388 NA coding downstream 200100 32958621 ~ 32972206 (-)
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding downstream 218375 32923867 ~ 32953931 (-)
ccdc78 LOC108269459 coding downstream 276456 32876470 ~ 32895850 (-)
fam234a fam234a coding downstream 475595 32687597 ~ 32696711 (-)
tmem204 tmem204 coding downstream 549572 32610019 ~ 32622734 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 77968 33250847 ~ 33284417 (-)
fgf21 LOC108263130 coding upstream 146985 33319864 ~ 33326553 (-)
LOC117597600 LOC108261633,LOC108268894,LOC108273545,LOC108263642,LOC108270753,LOC108263117,LOC108410737,LOC108261292,LOC108412218 coding upstream 256045 33428924 ~ 33453389 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 288899 33461778 ~ 33472267 (-)
LOC117595708 LOC108263642,LOC108270747,LOC108274210,LOC108273544,LOC108273692,LOC108270753,LOC108261406 coding upstream 326405 33499284 ~ 33506987 (-)
G18231 NA non-coding downstream 21430 33150260 ~ 33150876 (-)
G18224 NA non-coding downstream 38796 33133308 ~ 33133510 (-)
G18197 LOC108273185 non-coding downstream 110794 33013780 ~ 33061512 (-)
G18182 NA non-coding downstream 190996 32981075 ~ 32981310 (-)
G18170 LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753 non-coding downstream 220964 32943736 ~ 32951342 (-)
G18279 NA non-coding upstream 16317 33189196 ~ 33189674 (-)
G18280 NA non-coding upstream 17668 33190547 ~ 33191208 (-)
G18299 NA non-coding upstream 59939 33232818 ~ 33233039 (-)
G18323 NA non-coding upstream 179085 33351964 ~ 33352182 (-)
LOC117597510 NA non-coding upstream 240801 33413680 ~ 33414566 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 216603 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 575501 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1119752 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1560334 31584741 ~ 31611972 (-)
G17199 telo2 other downstream 2168997 31002409 ~ 31003309 (-)
G18432 NA other upstream 398500 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 399874 33572753 ~ 33616366 (-)
G18848 NA other upstream 842169 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1093425 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 1111187 34284066 ~ 34998396 (-)

Expression


Co-expression Network