G18846 (tbc1d24)


Basic Information

Item Value
gene id G18846
gene name tbc1d24
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34003027 ~ 34005760 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22325
AAGGGTGTTTGCTctaaacactttattaaacacTTTATTGACATTTATGATACAGAGTGATGTGCTTTAATTAATGAtataacacatacacaatgATAATactgatgaacacacacacacacacacacacacagcctctgtTATAgaacgtgtttttttttaacatcaacatACTTCATCTTTAAGACTTTACCAtttaaacaattacaattttaatgatATGTTCAAAATGTTACTTTactagcacaacacacacacttcattaatATGTTCAGTTTCACAAGTAAGAACCTTCtcatacataatacacacacacctactcacaaacacaaaacatactCGGTAAAACGACAACATTTGGCAAATCTACACATAGAAATTTTATCTAACGACAGTCTAATATCCGTACAACATTCATCAAACACGATGATATGATCAAGAACCATGAACAATAAAGATCGTTTCTGAAACTAGCTTTAACTCAGTATAACGAGCGttaacaaataacaacaaatgATATACGATGTattgtaatttaaatattaacaataacataataagactgcagtgcattatgggtattctgcACAAGCTTCGGTTCACTGTGTATGATGATATATCGGTTTGATAGTATACTGTGATACTGCGAATATCGTATAGATTATGATTACTAAGAAGAACGTTGTTGACCCTGGTTAGAGATGTGACGATATATCAGTATGGCAATTTACTGTGATAATTAACTCAGAAAtagttatactgtattataacGTGATTCATAAGGAAATTacatcacaaataaacacaaacactagaAATCACCAGAAACACTAGAAAAGAGGAAGCTGTAAGTAGACACTGATATTGTAATTGAGCGTAATTTATCTTACTGTTCTGAAACTTTCTCGAGTATGCTGGTGGGTTTCTTTCAAGAATTTGTCCAAAAGTAGTGCACTATGCAATGAAGAGCAGGCTCAGGATCAGAATCAGGATGTGTGTTAACACATCCACAtgcttttatataatataatataatataatataatataacgaTATAAAGATGAACTCGGTAATGATGGCTGCAGCATTCTCTCTCCGGATGTGCTAATTGGCTGTTAGGTTGCCATGGCGTCCTGGAAGCCCCAGACCTCGAGCACGGCGATCTGGAAGTTCTCGGAGCACAGCGGTGGACTGTCGAAGGTGGAGCAGCGACCCGTCCGGCCGTGATTCAGCTCCGAGTCGATATACAGAGCGTTCCCCTCACCACCTCCTGCACCGATGATGATAGATTCAACGTTTCCCGCCATAAACATGGACGTGTTATGAACATTCAGGTGAAAGTGTCGGGCAGCAAGGAATGGCGAGAGGTGGGTGGAGTCTGTGCCAGAGTTGGGCGGAGCCTCCACAGGCAGTGAGTGTATGTTCTCGTCAGAGTCTGGAGCGTTAGCATCAGCTGCACGATCGGACACAGAGCTGGCCAGCTCTGGATGTTTAATGATGACCCACTCATAACGCTCTACCTCAGGcttc

Function

symbol description
tbc1d24 Predicted to be involved in dendrite development; neuromuscular synaptic transmission; and synaptic vesicle recycling via endosome. Predicted to be located in cytoplasmic vesicle; membrane; and synapse. Predicted to be active in several cellular components, including neuromuscular junction; postsynapse; and terminal bouton. Human ortholog(s) of this gene implicated in DOORS syndrome; epilepsy (multiple); and nonsyndromic deafness (multiple). Orthologous to human TBC1D24 (TBC1 domain family member 24).

NR:

description
PREDICTED: TBC1 domain family member 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22325 True 1530 lncRNA 0.39 3 34003027 34005760

Neighbor

gene id symbol gene type direction distance location
LOC113525322 LOC108272270 coding downstream 156111 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 191662 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 231182 33769615 ~ 33771845 (-)
ntn2 LOC108274409 coding downstream 256791 33720816 ~ 33746236 (-)
kcnj12a kcnj12a,LOC108268745,LOC108413805 coding downstream 359784 33630038 ~ 33643243 (-)
nubp2 nubp2,LOC107677256 coding upstream 14183 34019943 ~ 34025608 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding upstream 159360 34165120 ~ 34176994 (-)
LOC117598299 NA coding upstream 351376 34357136 ~ 34359984 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding upstream 369731 34375491 ~ 34382482 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding upstream 515953 34521713 ~ 34542482 (-)
G18799 NA non-coding downstream 50181 33862202 ~ 33952846 (-)
G18796 NA non-coding downstream 142617 33859938 ~ 33860410 (-)
G18794 NA non-coding downstream 144861 33857708 ~ 33858166 (-)
G18446 NA non-coding downstream 283877 33718943 ~ 33719150 (-)
LOC113524631 NA non-coding downstream 505576 33493740 ~ 33497451 (-)
G18847 NA non-coding upstream 6010 34011770 ~ 34012029 (-)
G18853 NA non-coding upstream 21140 34026900 ~ 34029893 (-)
G18857 NA non-coding upstream 33801 34039561 ~ 34040640 (-)
G18859 NA non-coding upstream 36196 34041956 ~ 34044679 (-)
G18869 NA non-coding upstream 62148 34067908 ~ 34068971 (-)
dnah3 dnah3,LOC108263105 other downstream 386661 33572753 ~ 33616366 (-)
G18432 NA other downstream 431197 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1047324 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 1406222 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1950473 32000625 ~ 32052554 (-)
G18848 NA other upstream 9288 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 260544 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 278306 34284066 ~ 34998396 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other upstream 282802 34288562 ~ 34641985 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 804159 34809919 ~ 34929610 (-)

Expression


Co-expression Network