G18847


Basic Information

Item Value
gene id G18847
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34011770 ~ 34012029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22327
ACCGCTGAACACCATGGCTGCAGAGGCGCCCATGACGGCGAAGAAAGATATGTTACTCAGCTCGATCCTGCGAGGAGGTCAAAAGCCAAAACAAGGGTGCTGTACTCTAAATTACACTAATATACAGACAGGAAAGGAGGCGGAACAAACACCGGCTCAGGAAGACAAAATGGCGGCATCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22327 True 181 lncRNA 0.51 2 34011770 34012029

Neighbor

gene id symbol gene type direction distance location
LOC113525322 LOC108272270 coding downstream 164854 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 200405 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 239925 33769615 ~ 33771845 (-)
ntn2 LOC108274409 coding downstream 265534 33720816 ~ 33746236 (-)
kcnj12a kcnj12a,LOC108268745,LOC108413805 coding downstream 368527 33630038 ~ 33643243 (-)
nubp2 nubp2,LOC107677256 coding upstream 7914 34019943 ~ 34025608 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding upstream 153091 34165120 ~ 34176994 (-)
LOC117598299 NA coding upstream 345107 34357136 ~ 34359984 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding upstream 363462 34375491 ~ 34382482 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding upstream 509684 34521713 ~ 34542482 (-)
G18846 tbc1d24 non-coding downstream 6010 34003027 ~ 34005760 (-)
G18799 NA non-coding downstream 58924 33862202 ~ 33952846 (-)
G18796 NA non-coding downstream 151360 33859938 ~ 33860410 (-)
G18794 NA non-coding downstream 153604 33857708 ~ 33858166 (-)
G18446 NA non-coding downstream 292620 33718943 ~ 33719150 (-)
G18853 NA non-coding upstream 14871 34026900 ~ 34029893 (-)
G18857 NA non-coding upstream 27532 34039561 ~ 34040640 (-)
G18859 NA non-coding upstream 29927 34041956 ~ 34044679 (-)
G18869 NA non-coding upstream 55879 34067908 ~ 34068971 (-)
G18870 NA non-coding upstream 56788 34068817 ~ 34069586 (-)
dnah3 dnah3,LOC108263105 other downstream 395404 33572753 ~ 33616366 (-)
G18432 NA other downstream 439940 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1056067 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 1414965 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1959216 32000625 ~ 32052554 (-)
G18848 NA other upstream 3019 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 254275 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 272037 34284066 ~ 34998396 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other upstream 276533 34288562 ~ 34641985 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 797890 34809919 ~ 34929610 (-)

Expression


Co-expression Network