G18853


Basic Information

Item Value
gene id G18853
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34026900 ~ 34029893 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22346
CTCCCGGTGCACAACCAGCTCCCGGTACACAACGAGCTCCCGGTACACAACGAGCTCCCGGTGCAACGATTTTTAACCTATTTAAACTAAATTCAAGAGTTAAATAACATGcacaattattaatataaattataccacagctcgggtgaatgctcgaatctgattggtcagtaggtgtgtgttatttccgtataacagcacaggtagcTCCGGCTGTAACACaaacgtttatattaatgcattcattctaaaacgttgttgtttctatagtaactaatGAGGTGAATTTTTTTGCTGGAAGAGATTtattcctgtaacagcagcgtCTGTAGTGTgttgcggtgtgttgtgttattacTTACGTTACCTGGACAACGCAGCAGTGCGTAGTGTTGCGGTGTGTTGTAGTGTCTCAcgttgtgttacagtgtgttgcagtgtgttgcgGTGTGTTGcggtgtgttacagtgtgttgcagtgtattgcggtgtgttacagtgtgttgcagtgtgttgcagtgtgttgcagtgtgttacagtgtgttacggTGTGTTGCGGTGTGTTGcggtgtgttacagtgtgttacagtgtgttatgtgtgttgcggtgtgttgtgttgcagtgttacagtgtgttatggtgtgttgcggtgtgttatggtgtgttacggtgtgttagagtgtgttagagtgagtactgtagtgtgttgcggtgtgttgtgttattacTTACGTTACCTGGACAACGCAGCAGTGCGTAGTGTTGCGGTGTGTTGTAGTGTCtcacagtgtgttacagtgtgttacagtgtgttgcGGTGTGTTGcggtgtgttacagtgtgttatggtgtgttgtggtgtgttacagtgtgttgcggtgtgttagagtgtgttagagtgtgtactgtagtgtgttgcagtgtgttacagtgtactGCAGTGAGTACTGTAGTGTgttgcggtgtgttgtgttattacTTACGTTACCTGGACAACGcagcagtgtgtagtgttgcgGTGTGTTGTAGTGTCtcacagtgtgttacagtgtgttgcggtgtgttacagtgtgttacagtgtgttgcgatgtgttacagtgtgttacagtgtgttatggtgtgttgcggtgtgttatggtgtgttatggtgtgttgtggtgtgttgcagtgtgttacactgtgttacagtgtgctgtggtgtgttacagtctgttgcggtgtgttacagtgtgttacagtgtgctgtggtgtgttacagtctgttgcggtgtgttacagtgtgtactgtagtgtgttgcgttgtgtgtactgtagtgtgttgcagtgagttacagtgcattgcagtgagtattgtagtgtgttgtggtgtgttacagtgtgttacagtgtgttgcGTTGTGTACTGCAGTAGAAGTGTTACACAGACGGGGGATTTACACGAGGCAGTGTTCTGCTCCAGCTgacggtgtgtgtgaggtcGTGCTCCTCTATTCGGCTCCTCCACTCCAAACCAGCCAGCGTGCTCAACAACACGTCACAGCCAGAGTCCTGCAGcaacgcTGGGTGGATGTTGACAGTAACAGTCTTTAAATACTCCTCAGGTTTGAGTCTTTTTACTCTCTCAGCTgcctctttcttcctcttctgctcctgtctcttctcctccttccgtctctctctctcctccttctgtctctctctctgtctctctctctcctccttctgtctctctctctccctctctctctcctccttctgtctctctctctcctctctgtcctccCCCCGGTTTCCTCTCCTCCTTGCCCCGGGGCTGGGGCTCCGGACAGCGGGGGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22346 True 1837 lncRNA 0.37 2 34026900 34029893

Neighbor

gene id symbol gene type direction distance location
nubp2 nubp2,LOC107677256 coding downstream 1292 34019943 ~ 34025608 (-)
LOC113525322 LOC108272270 coding downstream 179984 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 215535 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 255055 33769615 ~ 33771845 (-)
ntn2 LOC108274409 coding downstream 280664 33720816 ~ 33746236 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding upstream 135227 34165120 ~ 34176994 (-)
LOC117598299 NA coding upstream 327243 34357136 ~ 34359984 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding upstream 345598 34375491 ~ 34382482 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding upstream 491820 34521713 ~ 34542482 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding upstream 518092 34547985 ~ 34573604 (-)
G18847 NA non-coding downstream 14871 34011770 ~ 34012029 (-)
G18846 tbc1d24 non-coding downstream 21140 34003027 ~ 34005760 (-)
G18799 NA non-coding downstream 74054 33862202 ~ 33952846 (-)
G18796 NA non-coding downstream 166490 33859938 ~ 33860410 (-)
G18794 NA non-coding downstream 168734 33857708 ~ 33858166 (-)
G18857 NA non-coding upstream 9668 34039561 ~ 34040640 (-)
G18859 NA non-coding upstream 12063 34041956 ~ 34044679 (-)
G18869 NA non-coding upstream 38015 34067908 ~ 34068971 (-)
G18870 NA non-coding upstream 38924 34068817 ~ 34069586 (-)
G18895 NA non-coding upstream 83132 34113025 ~ 34113322 (-)
dnah3 dnah3,LOC108263105 other downstream 410534 33572753 ~ 33616366 (-)
G18432 NA other downstream 455070 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1071197 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 1430095 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1974346 32000625 ~ 32052554 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 236411 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 254173 34284066 ~ 34998396 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other upstream 258669 34288562 ~ 34641985 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 780026 34809919 ~ 34929610 (-)
G19080 NA other upstream 922183 34952076 ~ 35160443 (-)

Expression


Co-expression Network