G18857


Basic Information

Item Value
gene id G18857
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34039561 ~ 34040640 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22351
acttaccactaacactgcattagtgcactacacacttaccactaacactacaatagtgcactacacacttaccactaacactgcattagtgcactacgcacttaccactaacactacattagtgcactacacacttaccactaacactacaatagtgcactacacacttaccactaacactacattagtgcactacatagggtacgAAATAAGGGCTACTgtggtgtttgttttggtttcattACTCCCTGCACAAGCAAAATAACCATGCACCCTATTCAGTGCACTAGGGAGAGATTTGGGATTGTGAAAGATCAGCACTTTCAGCAGAGTTTCAAGAtaatattttagggaaaaataaacacaatcacGTGATTAAAAGCAGGAACATTACCTCTCTCAGCCGGTTCCGCcattctggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaatctccGCACAGCtcctcactgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22351 True 478 lncRNA 0.42 2 34039561 34040640

Neighbor

gene id symbol gene type direction distance location
nubp2 nubp2,LOC107677256 coding downstream 13953 34019943 ~ 34025608 (-)
LOC113525322 LOC108272270 coding downstream 192645 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 228196 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 267716 33769615 ~ 33771845 (-)
ntn2 LOC108274409 coding downstream 293325 33720816 ~ 33746236 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding upstream 124480 34165120 ~ 34176994 (-)
LOC117598299 NA coding upstream 316496 34357136 ~ 34359984 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding upstream 334851 34375491 ~ 34382482 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding upstream 481073 34521713 ~ 34542482 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding upstream 507345 34547985 ~ 34573604 (-)
G18853 NA non-coding downstream 9668 34026900 ~ 34029893 (-)
G18847 NA non-coding downstream 27532 34011770 ~ 34012029 (-)
G18846 tbc1d24 non-coding downstream 33801 34003027 ~ 34005760 (-)
G18799 NA non-coding downstream 86715 33862202 ~ 33952846 (-)
G18796 NA non-coding downstream 179151 33859938 ~ 33860410 (-)
G18859 NA non-coding upstream 1316 34041956 ~ 34044679 (-)
G18869 NA non-coding upstream 27268 34067908 ~ 34068971 (-)
G18870 NA non-coding upstream 28177 34068817 ~ 34069586 (-)
G18895 NA non-coding upstream 72385 34113025 ~ 34113322 (-)
G18902 NA non-coding upstream 93882 34134522 ~ 34136389 (-)
G18848 NA other downstream 2228 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 423195 33572753 ~ 33616366 (-)
G18432 NA other downstream 467731 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1083858 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 1442756 32589902 ~ 32596805 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 225664 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 243426 34284066 ~ 34998396 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other upstream 247922 34288562 ~ 34641985 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 769279 34809919 ~ 34929610 (-)
G19080 NA other upstream 911436 34952076 ~ 35160443 (-)

Expression


Co-expression Network