G18909 (LOC108268894,LOC108261257,LOC108273545,LOC108273219)


Basic Information

Item Value
gene id G18909
gene name LOC108268894,LOC108261257,LOC108273545,LOC108273219
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34715874 ~ 34716739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22423
tagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtctCAATaccctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacactgaggctggaacgctgcagtattacaggtgaaggttgtgctgctctgttttcagctctgaagtcaaacacctcatcacacctgagagaactgaatctgaacctCAATgaaccaggagaatcaggagtgaagctgctctctgatctactgaaggatccacactgtagaCTGGAgaaactacaatTTGAGACGGTTTAATTCGGATCTGatctgagtctcacacacagaggatgatgaggataaactcttacagtacaaagtgtttgaaaaacatgatcatTTAGTGATAATCAGATGGTGTACAACATGTCAG

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22423 True 449 lncRNA 0.45 3 34715874 34716739

Neighbor

gene id symbol gene type direction distance location
LOC117598307 NA coding downstream 27759 34685430 ~ 34688115 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding downstream 142270 34547985 ~ 34573604 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding downstream 173392 34521713 ~ 34542482 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding downstream 333392 34375491 ~ 34382482 (-)
LOC117598299 NA coding downstream 355890 34357136 ~ 34359984 (-)
LOC117598309 NA coding upstream 103188 34819927 ~ 34820909 (-)
LOC117598340 NA coding upstream 120814 34837553 ~ 34845305 (-)
LOC113527256 NA coding upstream 221069 34937808 ~ 34943835 (-)
LOC117597410 LOC108263642,LOC108261292,LOC108270747,LOC108270753,LOC108273691,LOC108264948,LOC108257668,LOC108268379 coding upstream 437739 35154478 ~ 35210846 (-)
LOC117598298 LOC108268894,LOC108261292,LOC108263117,LOC108270747,LOC108274210 coding upstream 518532 35235271 ~ 35239484 (-)
G19053 NA non-coding downstream 50522 34661678 ~ 34665352 (-)
G19054 NA non-coding downstream 63933 34643454 ~ 34651941 (-)
G18943 NA non-coding downstream 67498 34642803 ~ 34648376 (-)
LOC117598381 NA non-coding downstream 80604 34633350 ~ 34635270 (-)
LOC117598365 NA non-coding downstream 114481 34600158 ~ 34601393 (-)
G19060 NA non-coding upstream 47237 34763976 ~ 34769174 (-)
G19068 NA non-coding upstream 72904 34789643 ~ 34794002 (-)
G18937 LOC108268894,LOC108261257,LOC108263642,LOC108273545,LOC108273219 non-coding upstream 139711 34856450 ~ 34857134 (-)
G19074 NA non-coding upstream 157365 34874104 ~ 34877434 (-)
G18934 LOC108273691,LOC108268894,LOC108273546,LOC108263117,LOC108273545,LOC108261633,LOC108270753 non-coding upstream 165373 34882112 ~ 34891989 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other downstream 73889 34288562 ~ 34641985 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 445568 34266304 ~ 34270306 (-)
G18848 NA other downstream 678541 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 1099508 33572753 ~ 33616366 (-)
G18432 NA other downstream 1144044 33571379 ~ 33571830 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 93180 34809919 ~ 34929610 (-)
G19080 NA other upstream 235337 34952076 ~ 35160443 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 613527 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 772497 35489236 ~ 35516236 (-)

Expression


Co-expression Network