G18960


Basic Information

Item Value
gene id G18960
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34152488 ~ 34153258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22474
CGACTGTTCTCAGATACTACTCTGATAACTAAAAACATAAAGTTGATGGGCCtcccatatatatatgtatacacgcTGAtctgccataacattaaaaccccctgcctaatattgtgtaggtccctcttgtgccaccaaaacagctctgacccgtcgaggcatggactccacaagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcaggtcctttaagtcctgtatgttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagattgAGGTCTGGGGAATTAGGAGGTCATgtaacaccttgaactctttgtcatgttcctcaaaccattcctgaacagttttgaggcagggagcattatcctgctgaaagaggccactgccatcagggaataccattgccatgaagtggtgtacttggtctgcaacaatgtttaggtaggtggtacgtgtcaaagtaacatccacatgaatgccaggacccaaggtttcccagcagaacattgcctagAGCATCagactgcctccaccggcttgccttcttcctatagtgccttctggtgccatctcttccccaggtaagcgacacacacacacccggccttccacatgatttaaaagaaaacgtgattcatcagaccaggccaccttcttccatttacatttacatttatggcatttggcagacgcccttatccagagcgacttacaattatctcatttatacaactgagcagttgag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22474 True 771 lncRNA 0.47 1 34152488 34153258

Neighbor

gene id symbol gene type direction distance location
nubp2 nubp2,LOC107677256 coding downstream 126880 34019943 ~ 34025608 (-)
LOC113525322 LOC108272270 coding downstream 305572 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 341123 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 380643 33769615 ~ 33771845 (-)
ntn2 LOC108274409 coding downstream 406252 33720816 ~ 33746236 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding upstream 11862 34165120 ~ 34176994 (-)
LOC117598299 NA coding upstream 203878 34357136 ~ 34359984 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding upstream 222233 34375491 ~ 34382482 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding upstream 368455 34521713 ~ 34542482 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding upstream 394727 34547985 ~ 34573604 (-)
G18958 NA non-coding downstream 1077 34151193 ~ 34151411 (-)
G18905 NA non-coding downstream 12056 34139770 ~ 34140432 (-)
G18902 NA non-coding downstream 16099 34134522 ~ 34136389 (-)
G18895 NA non-coding downstream 39166 34113025 ~ 34113322 (-)
G18870 NA non-coding downstream 82902 34068817 ~ 34069586 (-)
G18972 NA non-coding upstream 48816 34202074 ~ 34204651 (-)
G18987 dcun1d3,zgc:154015,LOC107556658,LOC107558230,LOC107561121,LOC102779002 non-coding upstream 82979 34236237 ~ 34238396 (-)
G18929 LOC108273545,LOC108273546,LOC108268894,LOC108261633,LOC108263117,LOC108270753 non-coding upstream 190032 34343290 ~ 34351764 (-)
G19018 NA non-coding upstream 195357 34348615 ~ 34403824 (-)
G18954 NA non-coding upstream 196353 34349611 ~ 34406297 (-)
G18848 NA other downstream 115155 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 536122 33572753 ~ 33616366 (-)
G18432 NA other downstream 580658 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1196785 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 1555683 32589902 ~ 32596805 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 113046 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 130808 34284066 ~ 34998396 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other upstream 135304 34288562 ~ 34641985 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 656661 34809919 ~ 34929610 (-)
G19080 NA other upstream 798818 34952076 ~ 35160443 (-)

Expression


Co-expression Network