G19053


Basic Information

Item Value
gene id G19053
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34661678 ~ 34665352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22613
GTGACGGTTAATTTTTCAAACTGAGATGTCCGCCATTTCTGCCCGTTCCCTCAGGTTGGTTTTTTGTATGCATGATTTGATAAGGCCATTGGATTCACCTCCAttggacagacagaaacacGGCAGAAGAGCAGAGTGTGAGGAGTCCTTATCAGCAGGAACTGTTCCATTCGACGTGTCTTTCATCTCACAGAAGAGCGCTGGAGATCTCATcacactttaaaaaacacacactacccgggtagaacattttatttctttatttttttcagagctCTGATCCTAATTGTGAAAGGCtcattttgatttttctttgtccatattttttttctaagtacACTGATACTGATTGGACTAGAAAGACACTGGATTTTACaactgaaggaaaaaatattGGATTTAAATTCTGAATTGAAAGGACATTCCAACATTTGACATTGGTTCTATACTAAAAGGACATTGAGTTCTGAGTTACAAAGGGATATTGTGTTTCCAACTAAATACATTGTAACGGAAGAAAAAAGTCATTCTTAGTTTatgatttattgttaaataaatgcccca

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03020 RNA polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
TU22613 True 564 lncRNA 0.37 2 34661678 34665352

Neighbor

gene id symbol gene type direction distance location
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding downstream 88074 34547985 ~ 34573604 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding downstream 119196 34521713 ~ 34542482 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding downstream 279196 34375491 ~ 34382482 (-)
LOC117598299 NA coding downstream 301694 34357136 ~ 34359984 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding downstream 484684 34165120 ~ 34176994 (-)
LOC117598307 NA coding upstream 20078 34685430 ~ 34688115 (-)
LOC117598309 NA coding upstream 154575 34819927 ~ 34820909 (-)
LOC117598340 NA coding upstream 172201 34837553 ~ 34845305 (-)
LOC113527256 NA coding upstream 272456 34937808 ~ 34943835 (-)
LOC117597410 LOC108263642,LOC108261292,LOC108270747,LOC108270753,LOC108273691,LOC108264948,LOC108257668,LOC108268379 coding upstream 489126 35154478 ~ 35210846 (-)
G19054 NA non-coding downstream 9737 34643454 ~ 34651941 (-)
G18943 NA non-coding downstream 13302 34642803 ~ 34648376 (-)
LOC117598381 NA non-coding downstream 26408 34633350 ~ 34635270 (-)
LOC117598365 NA non-coding downstream 60285 34600158 ~ 34601393 (-)
LOC117598380 LOC108268894,LOC108273545,LOC108264971,LOC108270753,LOC108261292,LOC108273546,LOC108263117 non-coding downstream 66703 34591879 ~ 34594975 (-)
G19058 NA non-coding upstream 14672 34680024 ~ 34762821 (-)
G18909 LOC108268894,LOC108261257,LOC108273545,LOC108273219 non-coding upstream 50522 34715874 ~ 34716739 (-)
G19060 NA non-coding upstream 98624 34763976 ~ 34769174 (-)
G19068 NA non-coding upstream 124291 34789643 ~ 34794002 (-)
G18937 LOC108268894,LOC108261257,LOC108263642,LOC108273545,LOC108273219 non-coding upstream 191098 34856450 ~ 34857134 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other downstream 19693 34288562 ~ 34641985 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 391372 34266304 ~ 34270306 (-)
G18848 NA other downstream 624345 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 1045312 33572753 ~ 33616366 (-)
G18432 NA other downstream 1089848 33571379 ~ 33571830 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 144567 34809919 ~ 34929610 (-)
G19080 NA other upstream 286724 34952076 ~ 35160443 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 664914 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 823884 35489236 ~ 35516236 (-)

Expression


Co-expression Network