G19080


Basic Information

Item Value
gene id G19080
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34952076 ~ 35160443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22686
CAAAATAAGGGTCGTTTATTTATGTTCTGAAAAATGGCTGTTCAGTGGTGTAGATATATGCACTTTGATTTGCACTACATAATTTATAGAGTTGTTTGTTCTCATCGTTCTGAGTGTATTTTTGCAAATACTTTTTTGGAGACCTGTTTTATCTACTTTCATATTAgagatttctttctcttttcatgtcTCTATCTATAATTTCTTTTAATACAAGAGGGTTAAGAAACCTTACAAAAAGGAAAGCAATTTTTTTCTAtcttaaacagtttaaaacGGACTTTTGTTTCTTGCAAGAACGTCATTCCACCAAAGATGATTGTAACTTTTGGAGATCTCAGTGGGGGTTAGATTTATGGACGGCTCATGGAACAAGTCATTCAGCTGGTGTTTGCATCCTTAAACATCAGTTTAATGGGAAGATTGTACGCTCTGATTGTGACCCAAATGGCCGTTATATTTGCCTTGTAATAGAAATTTCAAATTTACTgtgtattattgttaatatttatggttttaatcaacaaaaagagaaggaaaaacttATTGATCAAGTGGAAGAACAGGTTTTGAATTTACTAACCAAATACCCaaatccttttttaatttttggagGGGACTTTAATGTGGCTTTGGATAACATCTTAGACAGATGGCCTCCAAAGTCACCTGATAAttcaaatctttatttaaagacGTTCATGGAACGATTTTCTTTAGTtgacagctggagagagactCATCCTTCTCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22686 True 754 TUCP 0.33 2 34952076 35160443

Neighbor

gene id symbol gene type direction distance location
LOC113527256 NA coding downstream 8241 34937808 ~ 34943835 (-)
LOC117598340 NA coding downstream 106771 34837553 ~ 34845305 (-)
LOC117598309 NA coding downstream 131167 34819927 ~ 34820909 (-)
LOC117598291 LOC108270753,LOC108261292,LOC108270747,LOC108261406,LOC108263117,LOC108268379,LOC108268894,LOC108274210 coding downstream 139723 34615249 ~ 34812353 (-)
LOC117598307 NA coding downstream 263961 34685430 ~ 34688115 (-)
LOC117598298 LOC108268894,LOC108261292,LOC108263117,LOC108270747,LOC108274210 coding upstream 74828 35235271 ~ 35239484 (-)
LOC117597413 LOC108270747,LOC108273692,LOC108263642,LOC108274210,LOC108273544,LOC108264948,LOC108261406 coding upstream 210868 35371311 ~ 35380403 (-)
LOC117597414 LOC108270747,LOC108263642,LOC108273692,LOC108261406,LOC108270753,LOC108257668 coding upstream 230631 35391074 ~ 35394421 (-)
LOC113524630 LOC108257668,LOC108261257,LOC108263642,LOC108261406,LOC108261292,LOC108268379 coding upstream 253996 35414439 ~ 35438302 (-)
LOC117597415 LOC108261406,LOC108274210,LOC108261257,LOC108273692,LOC108270747,LOC108273545,LOC108273219 coding upstream 290493 35450936 ~ 35460282 (-)
G18946 LOC108273545,LOC108273546,LOC108268894,LOC108263117 non-coding downstream 35538 34518737 ~ 34916538 (-)
G18934 LOC108273691,LOC108268894,LOC108273546,LOC108263117,LOC108273545,LOC108261633,LOC108270753 non-coding downstream 60087 34882112 ~ 34891989 (-)
G19074 NA non-coding downstream 74642 34874104 ~ 34877434 (-)
G18937 LOC108268894,LOC108261257,LOC108263642,LOC108273545,LOC108273219 non-coding downstream 94942 34856450 ~ 34857134 (-)
G19068 NA non-coding downstream 158074 34789643 ~ 34794002 (-)
G18936 NA non-coding upstream 27982 35188425 ~ 35190110 (-)
LOC117598388 NA non-coding upstream 28299 35188742 ~ 35189290 (-)
G19108 NA non-coding upstream 32723 35193166 ~ 35253421 (-)
G19109 NA non-coding upstream 43806 35204249 ~ 35293915 (-)
G19110 NA non-coding upstream 48191 35208634 ~ 35236680 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other downstream 22466 34809919 ~ 34929610 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other downstream 310091 34288562 ~ 34641985 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 681770 34266304 ~ 34270306 (-)
G18848 NA other downstream 914743 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 1335710 33572753 ~ 33616366 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 169823 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 328793 35489236 ~ 35516236 (-)

Expression


Co-expression Network