deptor (deptor,LOC107685573)


Basic Information

Item Value
gene id deptor
gene name deptor,LOC107685573
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21893147 ~ 21925684 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939584.2
CCCGAGGCGCGCTGCCACTGCGGGATAGCAAACACTCACCATCTCACTCATCCGCTCACTGCGGCTCAGCACTCACTCTCCTCCCCACTCACGAGCTTCACACATGAGCATTAATTCATTTACAGCCTTGGACAAAATTCTGAAGAAGAAtctgtatgcattttttttctcccacacacacacacacacacacacacacacacacacacacacagaagtgccTTTGTGCGACTGGAAAGAGCGAGTGCTTTGCTTGCTGGGATACAAAAGGCACAAGTTTGCTCCTGTCAGGAGGATTTAAACCTCCACTGAACACAGAGGCTGAATGAGTCAGGCTGCAGTTATGGACGGAACAACTCAGCGGTGACTGGGATCACAAATCATTACTCGGGATTTGGTGGAAAACAGATCGATCGTCAAATCAACAAGAGATGGACTCGATCGGGAACACCATGCAGAACAAGGCTGCTGAGCTGGAGCGCATGGCTGAAGTGCTCGTTACTGGCGAGCAGTTGAGATTGCGGCTCCATGAGGGCAAAGTCATCAAAGACCGGAGGCATCATCTCCGTACCTACCCCAACTGCTTTGTGGCTAAGGAGCTTATTGATTGGTTGATCGAACACAAGGAGGCCTCAGACAGAGACACGGCCATCAAGATCATGCAGAAGTTGCTGGACCAGAGCATCATCCATCATGTTTGTGATGAGCACAAGGAGTTCAAAGACATGAAGCTGTTTTACCGCTTCAGGAAAGATGATGGAACGTTTCCTCTGGACAGCGAGGCTAAGGTTTTCATGAGAGGCCAGAGGATATATGAGAAACTGATGAACGCAGAGAACAACCTGCTTAAGACACGTGAGGAGGACAGCGTTTCCCATGAGCGGACACTGGTGGGCTCGGAGTTTATTGACTGGCTCTTGCAGGAAGGGGAAATGGCCACCAGAGAGGAGGCAGAGCAGCTTGGGCGGAGACTGCTGGAGCATGGAATCATTCAGCATGTTACCAACAAGCACCACTTTGCGGACGGTAACCTCCTCTTTCAGTTCCGGATGAATTTCCGCCGGCGGAGGCGACTGATGGAGCTGCTGAACGAGCGAACTCGCGTGATTCCAGAGAGCCATGACAGCCCGTTCTGCCTGCGCAAACAGAACACtgacagcagcaacaacagcttCCTCTCTGTGAGCCCCACTAAAGAGATTAAGGTGGTGTCGGCAGTGAGGCGCAGCAGTATGAGCAGTAGCTGTGGCAGCAGTGgttattacagcagcagtcCCACTCTGAGTAGCAGTCCTCCTGTGCTCTGCAACCCCAAATCTGTGCTGAAGAGACAAGTAAGCCCAGAGGAGCTGCAGACTCCAGGAGGGCCCTTTATAAAGAAGACATTCACTaTTGTAGGTGATGCAGTGGGCTGGGGCTTCGTGGTCAGAGGAAATAAACCCTGCCACATCCAGGCTGTTGACCCCAGTGGACCTGCTGCTGCAGCAGGGATGAAGGTGTGTCAGTTTGTGGTGTCGGTCAACGGGCTGAATGTGCTGAATCTGGACTACAAGACTGTCAGTAACCTCATCCTCACTGGACCCAGGACTGTGGTCATGGAGGTCATGGAAGAGTGTCAGTGAAAGCTTTTGGTGGAATCTTCAGCAGAATATTTTAGAGAAAGGCAGAGATCCAGTCATCGGATGTCACATCATCACTGTTGATCTTATCACTATTAATTCAAAATTTGAGTTCAGTGACACTACTTCCTGTTCGTGCCTCACATCATTCGCCAAGAGACTCATTATGAGGACGTTATGACGACAGAAGGGAAAAAGGGAATTGTGTCAAGACGTCATTGTAACGAACTGTGTACAGATTGGAGAAATTGTTCTATACAGATTTATGATATGCTTCTTGAGTATGGGAATCCATTCctaaacattttgtgtgtaGCATTCAAGTGATGACCAAGAGCTTCATTCAGGCTTGAGCGATGTTTATGAGTAGCTGAGCGAGGCtaacaataacacactgttGTGTTGCAGTGCTGCAGTGCAGTCATGCATGGCTAACAAAGTGTCGATTCCACGCATTTTCAGGGCTAAGTGTCAATAGGTCATATTTTGAGACACCCGAACGTTCTTTAATTAGGATTTAAAAGGGATAAGCTTTACCTCGGCAGTGTCAGAAATatgtcaccttttttttttgcatccataaactttaatgaagaaaaatgttgatgttgaaAAGAGGAACCACACTTACATGTGATTTCTGTATGTCTGTAATTTTTGAAGGTAAATATAGGACccttttaaaacattattatttacactataatgtaaatatttaccaATATTTACACTGCAAAGAATgttatcttagcaagtgaaaatatcttgaatatagtcaaattgattatattatatagtatttcctattataagatgcAGAAAATCAGCTGATAGCATCAATAATCTTTATATGTTGTTGATTGTAAATTTATAATACTAACTAAATTTTACTATATTCAGCTATGTCAAGATattttcaagatatttccacttgctaagacTACATTTTTCCAGTGTAGTTACAGTGAAAGTGTCTGATAGGTAACTGGAAGGCactttttagttttctttataATGTGAAACATATAGTAGCAATAGTggtaacatttttatattaaggtTCCTGTATTTATTGCATTAAAAGTAACACATGTTAATCTTAGCATTAATAACTCAAGTAATTTTAACAAAGTAATTGAACTTACCTTTAAATGGTAATTAAATACACCAGCATTGACTAATGTTTACTCAATCCgtgactaaaaataagtctacagaaattagcaaaaaataaattacaccaTGTTGCTAAATGCTGAAATTGTACTGAGGACTGGTCTCCAGGTGTAAATACTGAAACTTGCTTTTCAGCCTCAGTCCTGAATTTTACTAGTTAACAACCACTAACATGTTGGTTCATACTGCTCATTGTTGCCTTATGTTTACTTACTGATTGTATGAACATTGGTTAAGGCATACAGATATGTCGATTATTTGGCTTATTTAGTTTTGGCTTATTTTGGTTTATAAAAATCACTTGATACAAGagttaaataatttgttaaagtttttggtaacatttattaatgctgaaaacAAATTATGTCTTGTTCGTGTTActaatgcattaaatattaGTTCAGGAAGCCTTAATGTAAAGGATTACCTCAATAATCATATTGtgctaaatattaataacaatatatGATAGCCATATTGTCTCATGTCTGTAACATggcagaattaaaaaaaaaaaaaaaaagatcagtaaTATA

Function

symbol description
deptor Predicted to act upstream of or within intracellular signal transduction; negative regulation of TOR signaling; and negative regulation of protein kinase activity. Orthologous to human DEPTOR (DEP domain containing MTOR interacting protein).

NR:

description
PREDICTED: DEP domain-containing mTOR-interacting protein isoform X1

GO: NA

KEGG:

id description
K20402 DEPTOR; DEP domain-containing mTOR-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939584.2 True 3334 mRNA 0.42 11 21893147 21925684

Neighbor

gene id symbol gene type direction distance location
col14a1a col14a1 coding downstream 10937 21792011 ~ 21882210 (-)
mtbp mtbp coding downstream 121440 21748221 ~ 21771707 (-)
mrps2 mrps2 coding downstream 378792 21509640 ~ 21514355 (-)
setd2 setd2,LOC106606040,LOC107743179,LOC107673014,LOC107685560,LOC107752833,LOC107581536 coding downstream 413914 21455371 ~ 21479233 (-)
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding downstream 520453 21361624 ~ 21372694 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding upstream 82551 22008235 ~ 22019237 (-)
gba gba,LOC107596705,LOC107598447 coding upstream 106784 22032468 ~ 22038626 (-)
dap3 dap3,LOC106597783 coding upstream 115451 22041135 ~ 22045666 (-)
rusc1 rusc1 coding upstream 161665 22087349 ~ 22101094 (-)
fdps fdps,LOC107673012 coding upstream 177413 22103097 ~ 22110703 (-)
G12373 NA non-coding downstream 34307 21857615 ~ 21858840 (-)
G11974 NA non-coding downstream 357948 21493358 ~ 21535199 (-)
G11961 NA non-coding downstream 369432 21475423 ~ 21523715 (-)
G11973 rbm12b non-coding downstream 399938 21487710 ~ 21493209 (-)
G11970 NA non-coding downstream 409448 21480619 ~ 21483699 (-)
G12377 NA non-coding upstream 1775 21927459 ~ 21930143 (-)
LOC113542638 NA non-coding upstream 8999 21934683 ~ 21937785 (-)
G12498 NA non-coding upstream 407441 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 764292 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 765287 22690971 ~ 22691193 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 617806 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2069464 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2146264 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2147207 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2189987 19702611 ~ 19703160 (-)
aicda aicda other upstream 760723 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 975667 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1194788 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1207242 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1551474 23477158 ~ 23527323 (-)

Expression


Co-expression Network