fdps (fdps,LOC107673012)


Basic Information

Item Value
gene id fdps
gene name fdps,LOC107673012
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22103097 ~ 22110703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939589.2
CTACAATACCCCAAAGCCCCTCAGACATGTGGGACGTCGGGGCTTTTCTTACGGCACTCATCAGGTAAAATAAAACTGCCCTCACAACTGCCAGAGTAATGTTTTGGCACTGCCATTAGCTCAAGGCAAGGACAAGCACAACATGGGAGACTGCAGTAAAGCTGTCCACTTGTCAGACCCACAGCTTTTTGACAGATACTTTGAGAAGCTACTGTGTGAGTTGACAGAGCAGGATTTCACAGACCCAGTACTTGCTGATGCTCTCAAGAGGCTCCGAGAGGTACTGCAGTACAATGCCACAGGAGGCAAGAGGAACCGTGGCTTGTCTGTGATTGGCTCACTGCGTGAGTTGGTCCCGCCCTCCAAGCTATCACCTGAAGAAGTGGAGCGTGCCCTGTTGGTTGGATGGTGCATTGAACTGctGCAAGCTTTCTTCTTGGTAGCAGATGATATAATGGATGCATCTTTAACACGGAGAGGTCAGCCATGCTGGTATAAGAAGGAAGGCATTGGCCTGGATGCTATTAATGACGCTTTTCTCCTGGAGGGGTCCATCTACCGCCTGCTGCGTAGGCATTGCAGAAGGCAGCCCTACTATGTCCATTTGTTGGAGCTTTTTACTGAGACATCGTTCCAGACAGAGCTGGGGCAAGCCCTCGATCTGATGACTGCTCCCCCAAACAAGATCGACTTAAACCGTTTTACCATGGACAgGTATAAAGCCATAGTGAAGTACAAGACTGCATTCTACTCTTTTTATCTTCCAGTGGCCGCAGCCATGTACATGGCAGGAATTGACAGTGAAGTGGAACACAACAATGCTAAACACATCTTGCTTGAAATGGGGGAGTTCTTTCAGATTCAGGATGATTACTTGGATTGCTATGGTGACCCTGCAGTAACAGGCAAGATTGGCACTGACATCCAGGACAACAAGTGCAGCTGGCTTGTGGTGACAGCACTGAGGGTGATGACCCCTGAGCAGAGGGTGGAGCTAGAGGCATGCTACGGCCGGAGTGATGCTGAGAGTGTGGAGCGAGTGAAGGCACTGTACGACACTCTGGAAATGCCTCTCCGATACCACCAGTACGAGGAAGAGAGCTACCTGCGACTCCAAAACCTCATCCAGCGGCATGCTCAAAACCTTCCCCATGCTGTTTTTCTTAACTTTGCCAAGAAAATCTATAAAAGGAACAAATGaggcatgatttttttttttttttgcaagagcATGGAAAAGTATGTAAAGTATGTTTAgtgcaatacagcaaaaaaaggaACGTAGTGTATTTGATCAGTGGTGTAAATATGTTCTCAAGAATATAGACATGTATATCTTAAAAActttagaaatgtgtttttttttcccaaacatATATTGGACTTTGAGACAGCCCAAAATGAAATGAGATGTTTTGAGAGATGTATTTCAATCTAGAAAGAAGCTGGACTAATATTCAAACTGTCAGTTGTTATCAGCTCTGATAGCTGGAATGTTACACTTGTAAATTGTCCAAACCAaataatttaattgtattttttatagaATTATAGTTGTTCATTCAGTAAGAGAAACAGCAGTCCTGTGCAAATGGAATTGATGAAATGTAGCTTTTCATACTTTTCataatatatttcagtttaagGCAGAGGGAAACAAAATGTTGGTCATCAGGCAGTGATTGGTACCGATCTGATCCGTCACTCTGTTCTCCTCAGTGGGTTCTTTATTTGGCAGTGTGCATTGTTTAAAGACTAAACAACTATCATCCACTTTCTGAAACTCGAAGTAGAAATCTAAACTGTTCATCTGTTTACCAACCTGTTTTTCTGCCAAAGAAAATGTCAGTGGTAGGATAAATAGATCTTTCTGGTGGGAACTGCTTAAAATaagcaaatcagaaatgaattACTGTGAAAACTACTTTTTAAAGTAGTGGTATTTTTAATATACACCTGAAATGGTGCTGTGTTTCAAATCCCAGCCACTTACTGTCAACCTGGATGATATCAATAAAAAAGAGGGTTACATGA

Function

symbol description
fdps Predicted to enable dimethylallyltranstransferase activity and geranyltranstransferase activity. Predicted to be involved in farnesyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human FDPS (farnesyl diphosphate synthase).

NR:

description
farnesyl pyrophosphate synthase-like

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00787 FDPS; farnesyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939589.2 True 2034 mRNA 0.43 10 22103097 22110703

Neighbor

gene id symbol gene type direction distance location
rusc1 rusc1 coding downstream 2003 22087349 ~ 22101094 (-)
dap3 dap3,LOC106597783 coding downstream 57431 22041135 ~ 22045666 (-)
gba gba,LOC107596705,LOC107598447 coding downstream 64471 22032468 ~ 22038626 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding downstream 83860 22008235 ~ 22019237 (-)
deptor deptor,LOC107685573 coding downstream 177413 21893147 ~ 21925684 (-)
LOC113542354 NA coding upstream 3714 22114417 ~ 22132220 (-)
si:ch211-149k23.9 LOC108266957 coding upstream 22729 22133432 ~ 22140874 (-)
atg12 atg12,LOC107692547 coding upstream 30300 22141003 ~ 22143447 (-)
grwd1 grwd1,LOC107692548,LOC107750005,LOC107549456,LOC107737912 coding upstream 44835 22155538 ~ 22161293 (-)
zgc:174888 NA coding upstream 59224 22169927 ~ 22180493 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding downstream 142798 21872276 ~ 21960299 (-)
LOC113542638 NA non-coding downstream 165312 21934683 ~ 21937785 (-)
G12377 NA non-coding downstream 172954 21927459 ~ 21930143 (-)
G12373 NA non-coding downstream 244257 21857615 ~ 21858840 (-)
G11974 NA non-coding downstream 567898 21493358 ~ 21535199 (-)
G12498 NA non-coding upstream 222422 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 579273 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 580268 22690971 ~ 22691193 (-)
G12642 NA non-coding upstream 580585 22691288 ~ 22691526 (-)
G12656 NA non-coding upstream 638910 22749613 ~ 22753941 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 827756 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2279414 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2356214 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2357157 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2399937 19702611 ~ 19703160 (-)
aicda aicda other upstream 575704 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 790648 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1009769 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1022223 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1366455 23477158 ~ 23527323 (-)

Expression


Co-expression Network