LOC113542255 (LOC108266323)


Basic Information

Item Value
gene id LOC113542255
gene name LOC108266323
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23850763 ~ 23853697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939644.2
aaaaagagaaaagaatgagACGTGAGCAGGAGGGGTAAAAGCACCCAAGCTCTTAATGTGTAGTCGAGAGAGCAGGAGCAGAGCGTAGAGAGtgggagggagaggaagaggggGTGACTTGCAGGATCTTGTGGAGTGTAACTGCTGCTTCAGTGCTGTCATTTACAGCCAGTGCCAGACTGCAGTGGAGTGTTTTGGCCATGCTGTGTACAGCACGGAGGAACAATGTGCGTGAGCTTGCAGTGCTGATCCTGGGCCTGCTCCCTCTGGCTCACATTCTCACAGCTTCAGAGGTGCTCGAGTGTGAGGAGAGCTTCTACAGAAACACCCCCCCACAGCGGGTCACTGAGTCGGGCTTGGAGAGGAGATGCCACAGCCTGGGAGCCGGGCGCACATTTGTTTCACTCTATCACCCTGGACACCAGTCTAATGTCTACACGGCTCTGCACCTAGGCCAGCACAATGCATGGGGCAAAGGAACAACCGAGGAATTGGATGAACCAAGTGAGACAGAAGTCCTCGGAGAAGAGTCCCATGTACACGTTCCAGCTTTGTACAAGAAGGACCAGGATGTCGCTTCATCACCCTCAGCTTCCCCTTTCCACAAACTGGATGCTCTTACTGCAGAGCTGGTAAAGAGCAGGACCGTACCACAGTGCTCTAAGGCAGGGGGGGGCGTGTACGTTCAGAGCGGTGTAGGTGGGCTGAGTGAGACGAAGGCAGATGTGCTGTGGTCGGCAGTGTGCTGCGATGTTCCTGACGGACTCGGCAGCTTCAGTATGGGAGTGGTCCAGGAGGGTGAAGGGGAGCTGAAGCTGATGAGCGTGAAGGCGCTGGAGGAACTAGTGGACATTAAGGAGCTTTTCTCAGGTGGGTGTGGAGAGACAGGAAGTCTGGGAGAAGAGCCACTGGAAATCACTGAAGTTCCTGAAAAAGACACAGCTGAGACGGACAAAAGCAGTGACAAGGACGAGGTGCCCAGCACGACAGCAGATAGAATTGAGTCTGAACCCAGCCTAGAAGAAAGCATTAATGAAACAGAAAGCTCTGAGTCTCAACAGGACAGTGTTATCCTCTATGTCCTGTCCTCTGCCATCTCTCTCCTGTGCGCTCCTCTCTCTCCAGTTGTCTCCACCCTCACAAACCTCCCCTCTCAAATCTGTTATGTCTTGCAAGAGGACGCAACCGTACTGGCATCGCTGCCCAGCGACAGCTTCAGTTTGGTTCAGAACCTGGGTTCTGGTGTAGTCTCGGGTGTTGAGAATGTAGGCAGCGTCGCATACCAAGTGGGTGAGCATAGTGTGTGCTCACTCTACACATTTATAAGCACAATAGCGGGTACCCTCATGCTTTCATGCCAGGAGGGACTGGTAGGTGCAGGAACACTAATTGGTGACGCTCTGGGGCTGGTGACCGGTGCACTGGGTGAGGTCTGGGACTTTGGGACAGAGGTAGTAGAGTGCATGTGGCAGGGGCTTAGTGGGTACGTGGGTGCAGTGGGTGCAGAGGTGGGCGAACAGGGCTGGTCAGTAGGTCAAGGGATGGGCACACTGGTCTGGAGGGGACAGAGGGGAGTTGGGCATGTGATTAATACGGTGGTGAGCATCATTGGGGGAGTGTTGGGAAACACGATGGAAAACATACAGGAAGCTTTCAGTGGGGAGTAAGAGAACAGGAGGTAGTTTTTTGTGCATGAGTGCATGGATCTAGCGCAAGTTTATTTATACTGCGTTACATCATTGTCAGTGTCTTGCTGCTAAAATGCAATCTGCACGAAACTGTTTATGTGGATTGGAATTATTTATGATGCACAATTCATCTCTTAAATCAAAAGATTGGGGACTGACATGAAGATCTTGTATGGATCTGAGGGCTTAGTGATTCATCTTTTACACTCTTTGTGAAGTTGGTGTAAGTTTGGTGCATTCAGCTGACTGTCAAAAGTGGAAGGGTTAGTAATTACAGAATGGAAAGTATGATGCTAATGTTTGTGATGTAAATTGAAATGTGAGTGGTATCATAGAGACCATGATGTGAACTCttatacagtacaatacaatgCAGTTCAGTCTCATCCCCATTAATAATCTTTCCAGCTTTGCCTTGGTGAAATATTTGCACAAATGTCCCTAGTTGTTAAACAGAATATCAGAAATTTGTATCTGTAGCAATAAAAACCTGGTGTTCAGTGTCAGTCAAGTGTTTGTGCCTAGTCATCTCCACAGTGAAACTGAGATACGTATGCACCAAATCCAACCTGAGTGATGTCTAAATAAAGGACTGTTTCAGGGGTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108266323

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939644.2 True 2294 mRNA 0.50 2 23850763 23853697

Neighbor

gene id symbol gene type direction distance location
vars1 vars,LOC107700174,LOC107723495,LOC107717441 coding downstream 3397 23827438 ~ 23847366 (-)
si:ch73-22o12.1 LOC108266341,LOC108261109 coding downstream 55647 23731602 ~ 23795116 (-)
atp1a3b atp1a3b,LOC108432319,LOC108266346,LOC107671176,LOC107723432,LOC107582039,LOC107551687 coding downstream 148406 23680292 ~ 23702357 (-)
pou2f2a pou2f2,pou2f2a,LOC107671217,LOC107717432,LOC107582157 coding downstream 215838 23592579 ~ 23634925 (-)
erfl3 erf coding downstream 271472 23537819 ~ 23579291 (-)
ino80e ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446 coding upstream 2386 23856083 ~ 23862923 (-)
si:dkeyp-77h1.4 LOC108266289 coding upstream 19235 23872932 ~ 23891281 (-)
mdc1 mdc1 coding upstream 37792 23891489 ~ 23909121 (-)
tubb5 tubb,LOC102780606,LOC107700172,LOC107717448,LOC107086735,LOC101486495 coding upstream 59392 23913089 ~ 23918564 (-)
ddr1 ddr1,LOC107551675,LOC107723396 coding upstream 81047 23934744 ~ 23977540 (-)
G13424 NA non-coding downstream 34705 23814277 ~ 23816058 (-)
G13369 NA non-coding downstream 322823 23527690 ~ 23527940 (-)
G13361 NA non-coding downstream 344465 23506020 ~ 23506298 (-)
G12917 NA non-coding downstream 719265 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 911967 22938226 ~ 22938796 (-)
G13438 NA non-coding upstream 57382 23911079 ~ 23912280 (-)
G13452 NA non-coding upstream 167833 24021530 ~ 24021918 (-)
G13465 LOC108266188 non-coding upstream 188557 24042254 ~ 24042606 (-)
G13467 NA non-coding upstream 189747 24043444 ~ 24043657 (-)
G13468 NA non-coding upstream 194406 24048103 ~ 24049660 (-)
dedd1 dedd2 other downstream 176284 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 323440 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 685179 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 721450 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 942623 22901351 ~ 22908140 (-)
LOC113542286 riiad1 other upstream 288902 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 382595 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 537833 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 682163 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 698601 24552298 ~ 24561375 (-)

Expression


Co-expression Network