LOC113542274 (cgn)


Basic Information

Item Value
gene id LOC113542274
gene name cgn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24442387 ~ 24475208 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939668.2
TCGGTAAAAGGTAACAGGTTGTATTTGGCAAGCACTTCACTCATTCAAGGTTGTTGGTTTGTGTCATGGAAGCTGTCACTGAAACACATTTCATGAAGGAGAGCTACAGAAGTGGATAGAAAACGCACTAACTAACACCAGCTTGCACACTTCACACCGACTGTAGCATGTCTGCATCAGCCTCGGGTAGAAAAACCCCAGTGGATTATGGGGTTCAGATCCGCTTCATAAATGACCTGCAAGATACAGGAGGTGGAGGGTGTCGAGACGGCTCGGGGAAATCCTCGTCCCGCTATGGCGTGGCTGTCAGGGTGCAGGGCATCGCGGGCCAGCCATATGTAGTGCTCAAGGATGGAAAGAAGGGAGACTCTTATGGAGTTCAGCTCCGAAACCCATCTTACAACAGCTTgcccagGAGGCGGGAGGATGGAATAGAGGATGGTCAGTATCCTCAGTATTCCACCTCAGACGGCAGCTCGTTGCGACGGGCTCAGTCTCACGGCTCTCTGCTGGACCGAGAGAGTGACTACAACAACTCCGTAAACGAGTTTAGGCGCCCTAATGGAGATGGGCGCTCGGGCAGCTATGCCAACTTGGATGGCAGGATCGGCGTAGGAATGGAAAGGAACCAGTGGGGAGGCTCCCACCAAGCAGGGCTGAACGGCTCTTTAGAGAAGGAAAATCTGAGAGGACTAGGCAGCTACTATGAATCTTCTTCTGGCGCTGTTAAACCTCCACGTGACAGACGCACCAAAAGTGGAGGAAGCAGTTCTGCTGGACAAGCTGGCGGTGTTGGAGGCTCCTCCAGGGGGCGCACTCCTGGTGTCAGTGCAGGAAACGGGCCTAATGCTGCAACTTCTGTCCTTTCTTCTGCTCAGCTAGTGCCTCCAAATGAATCTACTTCGCCTCCATCATCCTCACCTGCTTCAGGTTACAACAGACCGAGCCAAACTGCAGAAGCTTCCAGGATTTCAGCCGTGCTTTTCTATGATTTAAATAAAGGAAGTTCAACAGTAGATGCGCATGTGACTCCTGATCTTTTGATGGATCAAAGTCAGAGCTCAGGGTCGGAGTTCAGCAGCGAGGAGGATCAGATCCAGCAGATAATCTATGGTGTTCTACGACAGGGGAGCAGCGATAGCGATGCTGCAATCAAACGCAGAGTGCGAGTCATCTGCGATAAGATCCAGGGGCTTAAGATGAACAGATCAGACCTTGTACTTAAGGCAGAGCTGGAACAGAGTCTGGATGAAAATATTAATCTGCAGGAACAGCTGAACAGGAAGAAGACGGAGTTAGATCAGACACATTCTGAaATGATTCAGTTACGTATGGACAGAGAGAATGCTGAGTCTCGTGTCAGACAGCTAGAGGACCAACTGACAGGGCTGCAAGAGGAGCTGAGGAGAGAGACGGGCAACAGAGCAGAGACGGACGTGATGCAAGCGGAGTTGCTGGACCTGCGCAATGAACTGGCTGATATGGTAGCACGTCACCAGAGGCTGGAGGACgctctgagacagagagagcgggAGCTGACTGCACTGAAAGGTGCCCTGAAGGAGGAGGTGTCCACCCATGACAGAGAGATGGAAACTCTTCGACAACAATACAGCCAAGACATGGAGAAACTAAGAACCAGCATGGCACAGGTTTCTCAGTCTCAGGCAAGCATAGAAGCAGAGCGCCAGCGTGTGAACTCTACAGTACGCTCCCTACAGCAACAGCTGGAGGAGAGCAAAGAGGAAGCCAGCCATTGGAGGGAGCAGTTCCAGAGCACCAGAGATGAGCTTCGCAGCACCAAACAAGAGCTTCTCCAGGCTCGTTTAGATAAAGAAGAGTTTGAAGAGGAGCTAAAGGAGCTTCAGGAGAGACTGAACACAATGAAACGGCAGATCCCTGATGAGAAACAAAGTGAAACTCTCAACCAGGAGCTGGAGCGTTGCCGTGCATCCCTGAAGCAAGCAGAAGCCGAGGTAGAGAAACTAAAGAGGGACCTCGACAAGAAGACTATGGAAATTATTTCATTGAAGAAGACCAATCAGGAACTGGATGCCGAGCAAAAATATGAGATCAACAGGCTAAAGGACCAATCACGGAAAGATAAGGAGGAGCTGACTAAAGCTCATGAGAAAACCAAGCAGCTTGCCGATCCTGCACTGGTGGAGTCTCTGCGTGGGGAAATGCGTGCTGTACGTGGAGAGGCAGAGCGTCTGCGCAGTCAGCTGCTTTTGGCTGAGGAGGatctacagaaagaaagagagagactcgCCTCATCCCAATCAGAAATGAACACGGTCTCAAATGAACGAGAGGCAATGGAGGAGGCTAATGCACGCCTCAAAGACAAACTTGCACGTCTGGAGTCCACTCTGCAACAACAAGTTTCACAGAACCTGGAGGAAGAGCAGGAGCTGCAGTCGgagaacaggaagctgaggcaGCAGCTGGAAGAGGCCAAACGCAGCAGCACCAAACTGAGCcaggaaaaagaagaagcacTGAGAGCACTGGAGGAGCGGGACAAGGAGAGGGATGCTCTCCGCaaggaaaacacacagctgGACGAACAAAAGAAACAGCACGAAAAGACAGTGGACAAACTCAACAAAGAGatCGAGCGGTTGGCTGCTGATTCGAGTGTGTCTGTGCGGCTGGTACAGTCTCAGTTTGATGAGCAGAAAGAAAAGTGGAAGAAGGAGCAGCAGGAACTGCAGAAGATCAACAAGGAGAAAATCAGTGAGCTGGAAAAAACCCAGATCACTCTGCGATCTCTCCAGGAGGAGTTGTCTCGTCAGAAGAAAGAGCTGCAGTCGTTCTGTGAGGAAAAGGATAATGCTGTTCTGGACAGAGAGATGTTCATAAACCGCATCAAACACCTGGAGGGAGAGCTGGAGAGCCAACGCAACACATTCAACGATCGTGCCCGTGACATACGCAGCATGGAGGATAAAGTGAAGCGCTTAGAGCTGGAGCTGGATGAGGAAAAGAACAGCGTGGAGCTTCTCACAGACAGAGTAACCAGGAGCCGAGACCAGaTTGAGCAGCTGCGTTCAGAGCTAATGCAGGAAAGATCATCCAAACAAGACCTAGAGCTGGACAAAAATGCCCTGGAGAGACAGCTAAAGGAGTATAAATCCCGTATAAAAGATATGGAGGGCCAGTCCCGTAGTTCCACTAATGTTTCTCAGCTAGAGAGCAAACTACAGGATTTGGAGGAGCGGCTACGTAATGAAGAAAGAGATAAAACTGCAGCACTGTCCTCACAACGCCGCCTGGAGAGGAAGTTGAAAGAGCTGACCATGACCCTGGATGAGGATAGACAGCAGATCACTGAGCAGAGAGaccagCTTGCTCTGCGTGTGAAGGCATTGAAGAGGCAGGTGGatgagggagaggaagagataGAGCGGATGGAGGGATTGCGGAGGAAAGCAGTAAGAGACATGGAGGAGCAAATGGAACAAAAAGATGCATTGCAGACTCGAGTCACAGCACTGGAGAATGAACTCAAGAGGAAGATCCAGCAAGCCCGACACGTATCAGTGGGCTCACCAGGTCTCAGCTCAGATGATGACGATGAAGGCCTGTTTGACTCATCCACCATCACCTCCATCCTCACAGAGAGCAATCTACAGACCAGCTCCTGCTAGATGGACAAGTGCACTCTGTGATGATTTGGGTGAATGAGGAGTGACATCAGAAAATGAGAGACACTTTACACAGGTGGGATTAGGGCAAGACTGATTTTACTGTATGCCTTTTGGCTCTGTTGTAAATACTGGAAGTCAGAGGgagtaaaatttatttaactgaGCGAGCCTTATGAAGAAGTGGACACGCACTGTACAAACATGCATACTGTGCAAAGACTAAGAGCTGAATAGAAAATGTATTTAGTTCAAAGTGTTTTGTAGTTTGCACTTACCTGTATTCCATATATACTATAGTACTATCGATGTGATGTGACTAGCTGTGTTGAGCATAACTATTATTTAGCTGCGACTCTGAAAATCGTTGAGTTTTAGTTAAGGAGTTTTGCAAGGAAAGCACAGCTATCTTTCAAGATGCTATATATATCTCTGACACACGCGTTGTGTTTGATGCAACTTTGCATGAATcctcaaatttttttttgatcttaaacaaatgtgtgtgtgtgtgtatgtatatatatat

Function

symbol description
cgn Enables cadherin binding activity. Predicted to act upstream of or within bicellular tight junction assembly; epithelial cell morphogenesis; and microtubule cytoskeleton organization. Located in bicellular tight junction and plasma membrane.

NR:

description
PREDICTED: cingulin

GO: NA

KEGG:

id description
K06102 CGN; cingulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939668.2 True 4179 mRNA 0.49 21 24442387 24475208

Neighbor

gene id symbol gene type direction distance location
tuft1a LOC108265940 coding downstream 9421 24419481 ~ 24432966 (-)
aqp10a LOC108265981,LOC108429989 coding downstream 57164 24375921 ~ 24385223 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding downstream 67600 24332619 ~ 24374787 (-)
LOC117599025 LOC108266000 coding downstream 110420 24319306 ~ 24331967 (-)
LOC113542498 LOC108266011 coding downstream 131021 24294561 ~ 24311366 (-)
s100t LOC108265897,LOC107594934,LOC107714712,LOC107673706,LOC108441953 coding upstream 57563 24532771 ~ 24534495 (-)
LOC113542308 NA coding upstream 72056 24547264 ~ 24550488 (-)
lenep NA coding upstream 107293 24582501 ~ 24583824 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding upstream 109745 24584953 ~ 24622217 (-)
si:dkey-246i14.3 LOC108269281 coding upstream 295068 24770276 ~ 24807929 (-)
G13783 NA non-coding downstream 50983 24390511 ~ 24391404 (-)
G13782 NA non-coding downstream 54384 24387289 ~ 24388003 (-)
G13748 NA non-coding downstream 123967 24317682 ~ 24318420 (-)
G13752 NA non-coding downstream 172583 24266654 ~ 24269804 (-)
G13725 NA non-coding downstream 214618 24224266 ~ 24227769 (-)
G13819 NA non-coding upstream 139045 24614253 ~ 24619949 (-)
G13834 NA non-coding upstream 238781 24713989 ~ 24718852 (-)
G14303 NA non-coding upstream 588260 25063468 ~ 25065486 (-)
G14315 NA non-coding upstream 624194 25099402 ~ 25101229 (-)
G14333 NA non-coding upstream 670633 25145841 ~ 25148263 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 37857 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 202308 24236292 ~ 24240079 (-)
LOC113542286 riiad1 other downstream 293120 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 767908 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 915064 23477158 ~ 23527323 (-)
si:ch211-105c13.3 LOC108265907 other upstream 60652 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 77090 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 86292 24561500 ~ 24578247 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 786832 25262040 ~ 25266771 (-)
bcam bcam other upstream 920279 25395487 ~ 25487425 (-)

Expression


Co-expression Network