tuft1a (LOC108265940)


Basic Information

Item Value
gene id tuft1a
gene name LOC108265940
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24419481 ~ 24432966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939669.2
ACAGAGTGTGTATCGAGTTGGACGCAGGCGGAGGCTTCTAGTCAAAAttatctatttgtttgtttatttatttatttatttcgtttAAAAGAGTTTGTTTCTCAGTGAAAATGAGCAGCACTCGGAGCATGTGCATGTTCTCGGATATCAGAGCAGGAGACAGAGCGGATGGGTGCCGGAGACTCCGACTGACCCTGTACGACCAAATCCAGCAGCAGCCCACTGTAGGAAAGCCAATAGGGAGAGCATTTGCTTTGGTGCAGCCAACTAGTGAGAGGCAGCCGCTGAAGAACGAGCCCATCAAAGTCGAAGAGAAGGTTGAAGTCATAAAGGTGTATCTGCAAGCGCAGAAAAAGGAACAGGACAAGAATCAGCAGAGTCTGAAGATGCTCTCGGATGAGGTTTCACAAATACAAGAGGTGCGATACTGTTTGAAGAGCCTGAGGGAACAGATGGCAGCAAAAAACAGCCACAGAACAGAGCACAAGGTGCAGTTAACTCAAACTGGTGTGAGCAGAGGGAATTGTGCTCTGACATCACTATCAACACATGACAGTGACGACAAACAGgagTCTGTGGATGAACAGGAGCGAGAAAGGATGAGGGAAGTCAGCAAGAGACTGTACACTCAGCTTCAAGAGGCAGAGAAAAGACACCAAGAGGAGACAGAGAAATTACAGGTTGAGGCAGGTCAGTACAAAAGGCAGCTGTCTGAGCAGAGTGATCAGCTGAAGGAAGCTCATCTTAGAGCACAGCAGCAGGACCAGCGCATCAGAGAGCTCCAGCGGTTGATGGGCGGCATGGAACAGGAGAGCTCGTCCCTCAGGGATGAGTTAATGACCAGGGAGGCGGAGCTGCTGCAGCTGCGGGAGCTGAAAGAAGAGGGTCAAGCTGACAGAGAGAGATTGGAGGAGTTGGAGAAGGAGAATGCTATCATTAAGGAGAAGATACACCACCTTGATGATATGCTCAAGAGCCAGCAGAGGAAACTCAGACAGATGATTGAACAGCTGCAGAACTCGCGAATGGTAATTCAGGAGAGGGACCGTGTCATCAAAGAACTTGAGGAGAAAGTTGCTTTCCTTGAAGCAGAGAACAGAGAGCTGCGTGATCAGATGGACTATTTCCTGAACGGTCAAAGGTCAAACTCTGGCCTGTTGTCAGATTCCAGTGCTCAAATTGTCTACAGTAAGCCTCTGAAGCCCTCCACACAAAGTAACAAGAGTCTGCCGTTCATTAAAGTCATAGAGATCAAGTCATGAACATCTGTAACAACATTATCATAATCCGTATCTGAATGCAGCAGGTCATTAGTCGTCTCCGTACATTCTCAAGCACAACAGATTGTAATGATACACAATGTCTCGTGCTACGAACCACAGCTGCACAGTGCCCTTGCTATCTATCCTAACGACCACAGACGTACACGACTGCAGCTCAACACAATAAGCATTGTCAATTTTGTATGTAATTAATTTCAGTTATATATTGATGTAAATAATCTAGGTGTAGGTTTCAACATGTCACAACGTGCCTGTGAGCATGCATAAACTGACTTGAACTCAGCTGAAGTATGAGTTTAGAGGTGTTAAATACCTGTAGAGTAGCTTTTAACCAGAATGAAGAATAGTGCACCAAAGCATAACTGAGTAAAGAGAGGGAGTGAATGGTGTGGTATTCCTTTGAGGCTGGCCCTCTGGACACAATACTGCCTTTTTGTGAATACACAGGCAGAGGGAAACACTGTGGccctttcactttctctcactctgtctatTTGGCTTGAAGTTGAATTACTTAATATCTGactgttttaattattaaacacacagatcCTATGATCATCAAAAAAGCTCTTAACAGCTAACAAATTTGTGTAAAGATATGGAGAGGGAGCAGAGAGCTTTACCAGATGCTTGAGATTAATGAAGGAATTGAAGACTATCTGTATGGTTTTGATTCATGCATGCAGCTGAGTGCCCAGACAAGGTGCTAAAAATATTCTACTAAGTCCACAATCTTTTTAATGATGCTACTCAAAAGAGAAGTCGTTGATGAGCTAGGAGGTGGAAACCTGTTTAATTTGCTATGTAAACCCAAACCACACCagttgttttgttctgttgggAGGGAGTGAGCAGCACTCGTATTGAGTTTCAGCCTTTAGTTTGAGATCTTTTCTGGGCACTAAATCTGAGTTACACCCTTAGCATAGGTCAGTTAGAAACCTACTAAAATGTTAACCTATTTGTAACTTGTCATGATCTCCACTGTCCTGAAATATTTGACTGTTTCAATTAAACaatagaaaaattaaacaaatttttagATAGACCAAAATGCCTTGCCAAAAAAATTTGAGACTCTGTCAGGAGTTTGAGACCTTCTGTCAGGACAGTAAAATGAGTATAAAGTAACAATCCTCATTACTTAGATGAGTTAAAGAAGGATCTTGGAAATttcatgtatataaaaaaaaaattattggacTCTGTTGAAAAATGCATTTCACTAATGTTTAATTCACCACCAGGTTTTGTACATATTTGCTTACTCAAGAAACTTCTCAGTTCCTGCTTTTTGTGTATTTAGATTCTGTAACTGTCCATAAATGGCCTTCAACTTTGCA

Function

NR:

description
tuftelin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939669.2 True 2629 mRNA 0.42 12 24419481 24432966

Neighbor

gene id symbol gene type direction distance location
aqp10a LOC108265981,LOC108429989 coding downstream 34258 24375921 ~ 24385223 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674 coding downstream 44694 24332619 ~ 24374787 (-)
LOC117599025 LOC108266000 coding downstream 87514 24319306 ~ 24331967 (-)
LOC113542498 LOC108266011 coding downstream 108115 24294561 ~ 24311366 (-)
LOC117599236 NA coding downstream 133939 24271843 ~ 24285542 (-)
LOC113542274 cgn coding upstream 9421 24442387 ~ 24475208 (-)
s100t LOC108265897,LOC107594934,LOC107714712,LOC107673706,LOC108441953 coding upstream 99805 24532771 ~ 24534495 (-)
LOC113542308 NA coding upstream 114298 24547264 ~ 24550488 (-)
lenep NA coding upstream 149535 24582501 ~ 24583824 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding upstream 151987 24584953 ~ 24622217 (-)
G13783 NA non-coding downstream 28077 24390511 ~ 24391404 (-)
G13782 NA non-coding downstream 31478 24387289 ~ 24388003 (-)
G13748 NA non-coding downstream 101061 24317682 ~ 24318420 (-)
G13752 NA non-coding downstream 149677 24266654 ~ 24269804 (-)
G13725 NA non-coding downstream 191712 24224266 ~ 24227769 (-)
G13780 NA non-coding upstream 7680 24440646 ~ 24696017 (-)
G13819 NA non-coding upstream 181287 24614253 ~ 24619949 (-)
G13834 NA non-coding upstream 281023 24713989 ~ 24718852 (-)
G14303 NA non-coding upstream 630502 25063468 ~ 25065486 (-)
G14315 NA non-coding upstream 666436 25099402 ~ 25101229 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 14951 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 179402 24236292 ~ 24240079 (-)
LOC113542286 riiad1 other downstream 270214 24142599 ~ 24149267 (-)
dedd1 dedd2 other downstream 745002 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 892158 23477158 ~ 23527323 (-)
si:ch211-105c13.3 LOC108265907 other upstream 102894 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 119332 24552298 ~ 24561375 (-)
pbxip1b pbxip1 other upstream 128534 24561500 ~ 24578247 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 829074 25262040 ~ 25266771 (-)
bcam bcam other upstream 962521 25395487 ~ 25487425 (-)

Expression


Co-expression Network