sp8b (sp8b,sp8,LOC108261619,LOC105906357,LOC101158882)


Basic Information

Item Value
gene id sp8b
gene name sp8b,sp8,LOC108261619,LOC105906357,LOC101158882
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20946197 ~ 20949609 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939674.2
atattatattcGCAAAATGAAATCCACTTCAAGAAAAAATGGTCTATTTAAGGTTTTATGTGTATTAAATggcaataaaataatgataataataatgaaaacccAGGCAAATATATTAATCAATTATTGTACTCAATTAGCACAACAACAACTGTGATGatgaaaaaaagggggaaataaaataaaaaaaagataataataataataataaataatgagcaATTGCTCCAATTGATTGTATTGCTCCAACTGAAGTCATCATAACAAAACAAAGTTCAACTTTTCCAAACAATTCGACTGGCTCTCATTAAAGTTGCGCTCTTCCGCTCGCTGGATGAAGGGGGTGGAGGAACGTGTCTGGAGCGCGCTATTGATGACCTCACGCTACAATGTGGTCGCGTGAAAGTACGGCTGCTCTGATTGGTCGCTCAGGTCACAGCGGCACTTCAAAGCCGGAGCAGAGCCTACAATTGTGCTGGAATGGGCGGACCACATCATTGTATTGCACACCTCTAAAAAAAACACCGCTctaattcataaatataaaaaagatcCTCTGAGGAGGGCACTTTTGTGATGGCAACTTCACTTCTAGGGGAGGAGCCGCGATTAGGTTCGACACCTTTAGCTATGCTGGCTGCGACGTGCAACAAGATCGGGTGCCCTTCTCCATCCGCGATCTCGGATAACACGTCGTCCTTCGGTAAGGGATTTCACCCGTGGAAGCGCGCCACGGCTAGCAGCTGCAGTCTGGGCTCGGGTTTATCCTCCAGCTTCGGCGTGACCAGGAACGGCGGCGCTCTGGCGGACTCGTTCGGTGCGAGTGGCACAGCGGCGTCCAGCGCCTTCTCACTGACACCAGGCGCCTCCTCCAACTCCCATCTCGGCAACGAGTACCCCGTGTTCCAGCCCCCGGCGTCCAGCGCCTCTCAGGAAGCCGGCCATCAGCCCGTGTTCATCTCCAAAGTGCACGCCAGCGTGGACGGCTTACAAGGCATCTACCCGCGCATGAGCGTTGCGCACCCGTACGAATCGTGGTTCAAGTCGTCGCACGCAGGGCTGCCGACGGGCGATGTTGGGGCCACGAGCGCTTCCGCCTGGTGGGACGTTGGCGCGGGATGGATTGACGTTCAGAACGCCAACGGCGCCGCCGCGCTGCAGACACCGCTGCACTCAGGAGGACTCCAGTCGTCTTTGCATTCGCCGCTGGGCGGCTACAACTCGGACTACTCCGGTTTGAGTCACTCTGCTTTCAGCACAAGTGCGTCGCCACACCTGCTGACCGGCGGCCAGCACATCATGGACGGCTTTAAGCCTGTACTCTCTTCCTACCCGGACTCGAGCCCATCTCCCCTGGGCGGCGCAGGAGGTGCCATGCTGAGCGCGGCCCCGTCTGCCTCACTGGCTGGCTCTCCCAGGTCATCAGCGCGCCGCTACTCGGGCCGCGCCACGTGCGACTGCCCCAACTGCCAGGAGGCAGAGCGCCTGGGACCTGCGGGTGCGAGCTTGCGCCGTAAAGGCCTTCACAGCTGCCACATCCCGGGTTGCGGCAAGGTGTACGGCAAGACGTCGCACCTGAAGGCGCATCTGCGGTGGCACACGGGCGAGCGGCCTTTCGTGTGCAACTGGCTCTTCTGCGGCAAGCGCTTCACGCGCTCCGACGAGCTCCAGCGGCACCTGCGCACGCACACAGGCGAGAAGCGCTTCGCCTGCCCCGTGTGCAACAAGCGCTTCATGCGTAGTGACCACCTGAGCAAGCACGTGAAGACCCACAGCGCGGGCGGCTCCGCGGGCTCCGGCTCGGGCGGTAGCGGCGGCAAAAGGGGCAGTGACACCGACAGCGAGCACAGCGGGCCGGGCAGCCCTTCATGCAACTCCCCCGACCTGCTGCAGCCCGCCGAGGCACTTCCGCCCAGTATGAACGGCCGCGCAAACTCCCTCgattaaactgtttaaaaagaCTCTGGATTGGAAGCGGCAGGGTTAGTGACCTTCACAAACGAGGTCCTGACGTTTACTACGAAATAACAGAGGAGCCAGCTTCACTTCGACGTTATCAAGACACAAAGTTGATGATAACGCAAAAAAGTCAGCTTTGGCCCGGACAAATTCTGTGACGCAGTTgcaggaaagaagagaaaactttTGAGGAAGATCTGGGCACAAGACGAATTTGCTCCAAAGGCCCATTTTAATGGATTCGTGTTGGATACAGTTGAATTCGTTAATTCCAAGTTTTGAAATGTCAATCAGTGAAAGGGCCAGCAATGTTTCGCTTCTGTTCTGTTTcctcaaaataaaacagtggcaCTTTATTCATGAACACTCCTGAAAATTCACGTGTGGCaacaataatgaaaaatacGCTGTAATGTTGCCAAGTATTTTGTtcaaattaatttctttaatattgaaaaaaaatagcatagCATATATGTCGCACATTGGTCTTTATTCAGGAAGAATACAAAACTGACAATATTTGTATGAAATTTACTTATTTGCTATTGCTGAAAAACGAATGTACATAGTGAAGCTGTATAGAATAGTTTAGAGGATTATTACATACCTGTGTAAAAGTTTGGGTAACGTATTGTCCAAGATACAATTTTGTATAGTAGCTATTTTTAGTTGCATATTGACTctagtaaatatattaaattgtaTGGGAGTGCATTTTTGTGACAAGACGTCATATTTATCCATAaattggacttttttttataactggACCTTTATTTTGCGATCTAACAGAGTCGCACctttaaactgtaaaactgaaaaatcGAAATGAATTCGGTGTTAAATCGGGTTTTATCATTTATGTCAGCATGCACATGTGAGAGAAAAGCTCATTTCTATACCTTTTCCCCCAGAaatggttctctctctctctctctctctctctctctctctgaaagccCCTCAATAAAGGCAACATGGGTTAAGTTTACTATC
>XM_026939675.2
ctttttttttttttttttttttaaccatccaTCCTACAGGAGGAGCCGCGATTAGGTTCGACACCTTTAGCTATGCTGGCTGCGACGTGCAACAAGATCGGGTGCCCTTCTCCATCCGCGATCTCGGATAACACGTCGTCCTTCGGTAAGGGATTTCACCCGTGGAAGCGCGCCACGGCTAGCAGCTGCAGTCTGGGCTCGGGTTTATCCTCCAGCTTCGGCGTGACCAGGAACGGCGGCGCTCTGGCGGACTCGTTCGGTGCGAGTGGCACAGCGGCGTCCAGCGCCTTCTCACTGACACCAGGCGCCTCCTCCAACTCCCATCTCGGCAACGAGTACCCCGTGTTCCAGCCCCCGGCGTCCAGCGCCTCTCAGGAAGCCGGCCATCAGCCCGTGTTCATCTCCAAAGTGCACGCCAGCGTGGACGGCTTACAAGGCATCTACCCGCGCATGAGCGTTGCGCACCCGTACGAATCGTGGTTCAAGTCGTCGCACGCAGGGCTGCCGACGGGCGATGTTGGGGCCACGAGCGCTTCCGCCTGGTGGGACGTTGGCGCGGGATGGATTGACGTTCAGAACGCCAACGGCGCCGCCGCGCTGCAGACACCGCTGCACTCAGGAGGACTCCAGTCGTCTTTGCATTCGCCGCTGGGCGGCTACAACTCGGACTACTCCGGTTTGAGTCACTCTGCTTTCAGCACAAGTGCGTCGCCACACCTGCTGACCGGCGGCCAGCACATCATGGACGGCTTTAAGCCTGTACTCTCTTCCTACCCGGACTCGAGCCCATCTCCCCTGGGCGGCGCAGGAGGTGCCATGCTGAGCGCGGCCCCGTCTGCCTCACTGGCTGGCTCTCCCAGGTCATCAGCGCGCCGCTACTCGGGCCGCGCCACGTGCGACTGCCCCAACTGCCAGGAGGCAGAGCGCCTGGGACCTGCGGGTGCGAGCTTGCGCCGTAAAGGCCTTCACAGCTGCCACATCCCGGGTTGCGGCAAGGTGTACGGCAAGACGTCGCACCTGAAGGCGCATCTGCGGTGGCACACGGGCGAGCGGCCTTTCGTGTGCAACTGGCTCTTCTGCGGCAAGCGCTTCACGCGCTCCGACGAGCTCCAGCGGCACCTGCGCACGCACACAGGCGAGAAGCGCTTCGCCTGCCCCGTGTGCAACAAGCGCTTCATGCGTAGTGACCACCTGAGCAAGCACGTGAAGACCCACAGCGCGGGCGGCTCCGCGGGCTCCGGCTCGGGCGGTAGCGGCGGCAAAAGGGGCAGTGACACCGACAGCGAGCACAGCGGGCCGGGCAGCCCTTCATGCAACTCCCCCGACCTGCTGCAGCCCGCCGAGGCACTTCCGCCCAGTATGAACGGCCGCGCAAACTCCCTCgattaaactgtttaaaaagaCTCTGGATTGGAAGCGGCAGGGTTAGTGACCTTCACAAACGAGGTCCTGACGTTTACTACGAAATAACAGAGGAGCCAGCTTCACTTCGACGTTATCAAGACACAAAGTTGATGATAACGCAAAAAAGTCAGCTTTGGCCCGGACAAATTCTGTGACGCAGTTgcaggaaagaagagaaaactttTGAGGAAGATCTGGGCACAAGACGAATTTGCTCCAAAGGCCCATTTTAATGGATTCGTGTTGGATACAGTTGAATTCGTTAATTCCAAGTTTTGAAATGTCAATCAGTGAAAGGGCCAGCAATGTTTCGCTTCTGTTCTGTTTcctcaaaataaaacagtggcaCTTTATTCATGAACACTCCTGAAAATTCACGTGTGGCaacaataatgaaaaatacGCTGTAATGTTGCCAAGTATTTTGTtcaaattaatttctttaatattgaaaaaaaatagcatagCATATATGTCGCACATTGGTCTTTATTCAGGAAGAATACAAAACTGACAATATTTGTATGAAATTTACTTATTTGCTATTGCTGAAAAACGAATGTACATAGTGAAGCTGTATAGAATAGTTTAGAGGATTATTACATACCTGTGTAAAAGTTTGGGTAACGTATTGTCCAAGATACAATTTTGTATAGTAGCTATTTTTAGTTGCATATTGACTctagtaaatatattaaattgtaTGGGAGTGCATTTTTGTGACAAGACGTCATATTTATCCATAaattggacttttttttataactggACCTTTATTTTGCGATCTAACAGAGTCGCACctttaaactgtaaaactgaaaaatcGAAATGAATTCGGTGTTAAATCGGGTTTTATCATTTATGTCAGCATGCACATGTGAGAGAAAAGCTCATTTCTATACCTTTTCCCCCAGAaatggttctctctctctctctctctctctctctctctctgaaagccCCTCAATAAAGGCAACATGGGTTAAGTTTACTATC
>XM_034310558.1
aatattatattcGCAAAATGAAATCCACTTCAAGAAAAAATGGTCTATTTAAGGTTTTATGTGTATTAAATggcaataaaataatgataataataatgaaaacccAGGCAAATATATTAATCAATTATTGTACTCAATTAGCACAACAACAACTGTGATGatgaaaaaaagggggaaataaaataaaaaaaagataataataataataataaataatgagcaATTGCTCCAATTGATTGTATTGCTCCAACTGAAGTCATCATAACAAAACAAAGTTCAACTTTTCCAAACAATTCGACTGGCTCTCATTAAAGTTGCGCTCTTCCGCTCGCTGGATGAAGGGGGTGGAGGAACGTGTCTGGAGCGCGCTATTGATGACCTCACGCTACAATGTGGTCGCGTGAAAGTACGGCTGCTCTGATTGGTCGCTCAGGTCACAGCGGCACTTCAAAGCCGGAGCAGAGCCTACAATTGTGCTGGAATGGGCGGACCACATCATTGTATTGCACACCTCTAAAAAAAACACCGCTctaattcataaatataaaaaagatcCTCTGAGGAGGGCACTTTTGTGATGGCAACTTCACTTCTAGGGGTGAGTCTAAGGAGTTTCTTGCTGGTTTAATTAGTCCTACCATTGTTCTGCCGAGGGGATTAAAATTACTTCGGTCAGCGAAGGAAAGACAGACACTTGATTATGTTTTGAGGAAGCAAGTGAACAGATCCAAGCGGAGGTTCATTTCTCAGCTGCGACCCGGTTTCTATTCGACATATTCCTCTCATGATCATAGCACGTCCATGGTggaatatttatgatatttatttggCCGGAGCCTAAAGAGGAGCCGCGATTAGGTTCGACACCTTTAGCTATGCTGGCTGCGACGTGCAACAAGATCGGGTGCCCTTCTCCATCCGCGATCTCGGATAACACGTCGTCCTTCGGTAAGGGATTTCACCCGTGGAAGCGCGCCACGGCTAGCAGCTGCAGTCTGGGCTCGGGTTTATCCTCCAGCTTCGGCGTGACCAGGAACGGCGGCGCTCTGGCGGACTCGTTCGGTGCGAGTGGCACAGCGGCGTCCAGCGCCTTCTCACTGACACCAGGCGCCTCCTCCAACTCCCATCTCGGCAACGAGTACCCCGTGTTCCAGCCCCCGGCGTCCAGCGCCTCTCAGGAAGCCGGCCATCAGCCCGTGTTCATCTCCAAAGTGCACGCCAGCGTGGACGGCTTACAAGGCATCTACCCGCGCATGAGCGTTGCGCACCCGTACGAATCGTGGTTCAAGTCGTCGCACGCAGGGCTGCCGACGGGCGATGTTGGGGCCACGAGCGCTTCCGCCTGGTGGGACGTTGGCGCGGGATGGATTGACGTTCAGAACGCCAACGGCGCCGCCGCGCTGCAGACACCGCTGCACTCAGGAGGACTCCAGTCGTCTTTGCATTCGCCGCTGGGCGGCTACAACTCGGACTACTCCGGTTTGAGTCACTCTGCTTTCAGCACAAGTGCGTCGCCACACCTGCTGACCGGCGGCCAGCACATCATGGACGGCTTTAAGCCTGTACTCTCTTCCTACCCGGACTCGAGCCCATCTCCCCTGGGCGGCGCAGGAGGTGCCATGCTGAGCGCGGCCCCGTCTGCCTCACTGGCTGGCTCTCCCAGGTCATCAGCGCGCCGCTACTCGGGCCGCGCCACGTGCGACTGCCCCAACTGCCAGGAGGCAGAGCGCCTGGGACCTGCGGGTGCGAGCTTGCGCCGTAAAGGCCTTCACAGCTGCCACATCCCGGGTTGCGGCAAGGTGTACGGCAAGACGTCGCACCTGAAGGCGCATCTGCGGTGGCACACGGGCGAGCGGCCTTTCGTGTGCAACTGGCTCTTCTGCGGCAAGCGCTTCACGCGCTCCGACGAGCTCCAGCGGCACCTGCGCACGCACACAGGCGAGAAGCGCTTCGCCTGCCCCGTGTGCAACAAGCGCTTCATGCGTAGTGACCACCTGAGCAAGCACGTGAAGACCCACAGCGCGGGCGGCTCCGCGGGCTCCGGCTCGGGCGGTAGCGGCGGCAAAAGGGGCAGTGACACCGACAGCGAGCACAGCGGGCCGGGCAGCCCTTCATGCAACTCCCCCGACCTGCTGCAGCCCGCCGAGGCACTTCCGCCCAGTATGAACGGCCGCGCAAACTCCCTCgattaaactgtttaaaaagaCTCTGGATTGGAAGCGGCAGGGTTAGTGACCTTCACAAACGAGGTCCTGACGTTTACTACGAAATAACAGAGGAGCCAGCTTCACTTCGACGTTATCAAGACACAAAGTTGATGATAACGCAAAAAAGTCAGCTTTGGCCCGGACAAATTCTGTGACGCAGTTgcaggaaagaagagaaaactttTGAGGAAGATCTGGGCACAAGACGAATTTGCTCCAAAGGCCCATTTTAATGGATTCGTGTTGGATACAGTTGAATTCGTTAATTCCAAGTTTTGAAATGTCAATCAGTGAAAGGGCCAGCAATGTTTCGCTTCTGTTCTGTTTcctcaaaataaaacagtggcaCTTTATTCATGAACACTCCTGAAAATTCACGTGTGGCaacaataatgaaaaatacGCTGTAATGTTGCCAAGTATTTTGTtcaaattaatttctttaatattgaaaaaaaatagcatagCATATATGTCGCACATTGGTCTTTATTCAGGAAGAATACAAAACTGACAATATTTGTATGAAATTTACTTATTTGCTATTGCTGAAAAACGAATGTACATAGTGAAGCTGTATAGAATAGTTTAGAGGATTATTACATACCTGTGTAAAAGTTTGGGTAACGTATTGTCCAAGATACAATTTTGTATAGTAGCTATTTTTAGTTGCATATTGACTctagtaaatatattaaattgtaTGGGAGTGCATTTTTGTGACAAGACGTCATATTTATCCATAaattggacttttttttataactggACCTTTATTTTGCGATCTAACAGAGTCGCACctttaaactgtaaaactgaaaaatcGAAATGAATTCGGTGTTAAATCGGGTTTTATCATTTATGTCAGCATGCACATGTGAGAGAAAAGCTCATTTCTATACCTTTTCCCCCAGAaatggttctctctctctctctctctctctctctctctctgaaagccCCTCAATAAAGGCAACATGGGTTAAGTTTACTATC

Function

symbol description
sp8b Enables double-stranded DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including apical ectodermal ridge pelvic fin bud; midbrain neural keel; nervous system; neural plate; and neural tube. Orthologous to human SP8 (Sp8 transcription factor).
sp8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within dorsal/ventral pattern formation; embryonic limb morphogenesis; and proximal/distal pattern formation. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
transcription factor Sp8 isoform X2

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function

KEGG:

id description
K09198 SP8; transcription factor Sp8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939674.2 False 2958 mRNA 0.50 2 20946197 20949608
XM_026939675.2 False 2400 mRNA 0.52 2 20946197 20948745
XM_034310558.1 True 3203 mRNA 0.49 2 20946197 20949609

Neighbor

gene id symbol gene type direction distance location
macc1 macc1,LOC107728525,LOC107550840,LOC107684550 coding downstream 41951 20896369 ~ 20904246 (-)
LOC113542419 LOC103028094,LOC108440250,LOC108440212,LOC108440210 coding downstream 60326 20885067 ~ 20885871 (-)
twist1b twist1,LOC108256329,LOC103366955,LOC100712142,LOC107378688,LOC107103781 coding downstream 75449 20868371 ~ 20870748 (-)
ankrd28b ankrd28,ankrd44,ankrd28b,LOC107685545,LOC107596646,LOC107745379,LOC107550837,LOC107684548 coding downstream 194649 20733426 ~ 20751548 (-)
LOC117598413 LOC108267376 coding downstream 217138 20727452 ~ 20729059 (-)
rapgef5b LOC108267288,LOC107596719,LOC107674937,LOC107743169 coding upstream 107267 21056876 ~ 21105333 (-)
si:ch211-254p10.2 LOC108262958,LOC107752844,LOC103366948 coding upstream 163257 21112866 ~ 21118416 (-)
LOC113542399 LOC108270030,LOC108415428 coding upstream 171211 21120820 ~ 21130947 (-)
slc6a19b slc6a19b,LOC108270036,LOC107743232,LOC107596751,LOC107685553,LOC107662664,LOC105905464 coding upstream 181473 21131082 ~ 21139270 (-)
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding upstream 412015 21361624 ~ 21372694 (-)
LOC117597063 NA non-coding downstream 66383 20870795 ~ 20879814 (-)
LOC113542610 NA non-coding downstream 79311 20865805 ~ 20866886 (-)
G11569 NA non-coding downstream 100716 20845265 ~ 20845481 (-)
G11545 NA non-coding downstream 146785 20796750 ~ 20799412 (-)
G11523 NA non-coding downstream 269351 20674251 ~ 20676846 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding upstream 288426 21238035 ~ 21239276 (-)
G11961 NA non-coding upstream 525814 21475423 ~ 21523715 (-)
G11970 NA non-coding upstream 531010 21480619 ~ 21483699 (-)
G11973 rbm12b non-coding upstream 538101 21487710 ~ 21493209 (-)
G11974 NA non-coding upstream 543749 21493358 ~ 21535199 (-)
G10832 LOC108267614 other downstream 1122514 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 1199314 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 1200257 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 1243037 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 1246560 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 313968 21263577 ~ 21275341 (-)
aicda aicda other upstream 1736798 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 1951742 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 2170863 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 2183317 23132926 ~ 23165584 (-)

Expression


Co-expression Network