gba (gba,LOC107596705,LOC107598447)


Basic Information

Item Value
gene id gba
gene name gba,LOC107596705,LOC107598447
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22032468 ~ 22038626 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939690.2
TGACCGTCATGTGACCTCAGACAGCCAAATGATCAGGAAGTGAGACTTGTTTACAAAATGTTGCTAATGGCCGTATATTAGTATGATTGCAAATGGCTTGAGTGGAAAACTACATGTAGCTGTAACTAATGAAGACTGTTCACAGCCAGGTGACCTACAGGTGCAGAGACAGTATGAGGGCAGCAGATCTGTTTATTCTGATTGTTCTTCTAACCGGgacaatcacacacatcagagCAGGCAGTGATGAGTGCAAGGCGAGGTCCTTTGGCCAGAgctctgtagtgtgtgaatgtaatgCTACATACTGCGACTCGGTTGGTCATGTCAGCTTGCCTGCTGTGGGCCACTTCCTGTCGTTCCTGAGCAGCAGGGCGGGTAGGAGACTTCAGAGGGAGCAGGGTCAAGTGCAGAAGAACAGCACTGGAGCAGCTCTCAGGATCACTCTGGTCCCCACAGAAAAGTACCAGCATGTTAAGGGCTTTGGAGGAGCCATGACAGATGCGGCTGCCATGAACATTCTCTCTCTATCGACTAGAGCCCAGGACCAGCTGCTCAGACAGTACTTCTCCccagaggGTATAGAGTACACTGTGGTCCGAGTACCGATGGCCAGTTGTGATTTTTCAACTCGTCTGTATACATACGCTGACTCGCCTGAAGACTACAGCTTGCTCAACTTTAGTCTGTCTGAAGAAGACACACACATGAAAATTCCCCTgctgcagtgggcacaagcCCTGTCTGCTCGCCCGCTGTCCCTGTTCGCTTCTGCCTGGAGCTCCCCAGCTTGGTTGAAGACCAGTGGTGAGCTCATAGGGAAGGGCTTGCTTAAAGGAAAGCCTGGGGGCAAAGAGTATAAAACCTGGGCACAGTACTATATCAGATTTCTGGAAGAGTACAAGAAGCACAATCTCTCATTCTGGGCGTTGACTACAGGAAATGAACCTACTGCAGGTGAAATAACCAATTACAGCTTCCAGGCTTTGGGTTTCACTCCTGAGCTCCAGCGTGACTGGATTGCTCTGGACCTCGGTCCTGCTCTCCATTCATCCCCATATGCCAAAACCCGCCTTATGATCCTGGATGACCAGAGACTCCTGCTTCCTCACTGGGCCAAAGTGGTTCTGAGTGACATTCATGCTGCTCGATATGTCCATGGCATCGGCGTTCACTGGTACTTGGATAAACTAGTTCCTGCCAAAGTCACACTGACGACCACACATGACCTTTACCCAGAGTACTTCATTTTGGGCACAGAGGCGTGTCCTGGTTGGACAAAACTTGACCGTGGTGTGCGGTTGGGCAGCTGGGAAAGAGCTGAATATTACGCCCATGACATTATAGAGGACCTAAATAACTATGTGATCGGATGGACAGACTGGAACTTAGTGCTAGATATGAATGGTGGACCAAACTGGGCCAAGAATTTTGTGGACAGTCCCATTATCGTGGACCAAAGCAGGGATGTCTTCTACAAGCAGCCGACATTCTACAGCATGGCCCATTTCAGCAAGTTCCTGTGGGAGGGGTCTCAGAGAATAGGTGTGTCCCTTTCTGAACACACCTCACTGGAATGTTCTGCCTTCATCAGACCTGATGGTTCAGTAGTGCTGATCGTTTTAAACAGGTCTGATGCTGAGGTGCGATTTGAAGTCTGGGATCAGACCTTGGGATTTCTGCCTGCAAGCGCTCCCCCTCACTCCATCCTCACACTACTGTGGGCTACATCCTAATTACCAGTATTCAAGCATAGCCTTAAGCTACAATCTGTTTATGTCCCTTGACACAGTCATGCAAACGTTAACAGAACAATAGACCACTGGATATTTCAGAGATGATGCAAATAATCATACTTAAAATCATTTCAGTGCTAATCAAACTAACATATAGCCAAAACTGCATGCGGGATAGCTGTCAGGAATCCAGTCCACTAACAGTATTTTGAGTGACACATAGTGGGGGAAAAGAACTTTTGTCTTGACAAAATTAGTTTTTTGAGTTCACAGGGTAATCAAGGCATGATCCTGggactgaaaatgaataataatgaattttgcACTCTTGTACTGTTTGGAACAGTTGGCAGTGATTGATTCAGCCTGTTttgattctgaaaaaaaaaaaaaaaagattctggaGATTTATAGTCATTAtcttttcaattaaaaaagtgttatgtGTAAGTGTGAGAGCGTGAAAAAAGGAGATGTGGAAGATTGAATATGCATAATTTGTCATTAACACTGAGAAACTGCATTTACAGTCACTTGAAACTTCAGCATGTGCTTGACCTGCTTTTAATGTGATAATCTGGTAGACAGTTTGAAGCAATGTGTACATAATTGGATGGAAACATTTCCACGAGGTTTTGACAGTAAAGACTGTTATTATCTTAAGAAGACAGCGTTGGTTTTAGGAGGcttgtgatgtgtttaaaaatgcatatgCAGTGACAGAGTGCTCGGTCAGAGGAATGTAAGAGGCTACAGTTCAAATACAAACAACAGTAACCTTTGTGATCCACGTCTGACTTTCATTACATGAATTTCATTAATGTCGTTAACAAAGCTAATTGGTATTGCTCATCGATCATACACAAGCATCATGACCTTGTGTATAACCAATAGCAATCTGTCAGgctgaaaatgtggaaaattagTTTAATTAGTTTATGTATCAAACTGATCACTTTTAAATGAATACTAAAATGCAACCAAAAttagttgggaaaaaaaaaaaaa
>XM_026939691.2
TGACCGTCATGTGACCTCAGACAGCCAAATGATCAGGAAGTGAGACTTGTTTACAAAATGTTGCTAATGGCCGTATATTAGTATGATTGCAAATGGCTTGAGTGGAAAACTACATGTAGCTGTAACTAATGAAGACTGTTCACAGCCAGGTGACCTACAGGTGCAGAGACAGTATGAGGGCAGCAGATCTGTTTATTCTGATTGTTCTTCTAACCGGgacaatcacacacatcagagGCAGTGATGAGTGCAAGGCGAGGTCCTTTGGCCAGAgctctgtagtgtgtgaatgtaatgCTACATACTGCGACTCGGTTGGTCATGTCAGCTTGCCTGCTGTGGGCCACTTCCTGTCGTTCCTGAGCAGCAGGGCGGGTAGGAGACTTCAGAGGGAGCAGGGTCAAGTGCAGAAGAACAGCACTGGAGCAGCTCTCAGGATCACTCTGGTCCCCACAGAAAAGTACCAGCATGTTAAGGGCTTTGGAGGAGCCATGACAGATGCGGCTGCCATGAACATTCTCTCTCTATCGACTAGAGCCCAGGACCAGCTGCTCAGACAGTACTTCTCCccagaggGTATAGAGTACACTGTGGTCCGAGTACCGATGGCCAGTTGTGATTTTTCAACTCGTCTGTATACATACGCTGACTCGCCTGAAGACTACAGCTTGCTCAACTTTAGTCTGTCTGAAGAAGACACACACATGAAAATTCCCCTgctgcagtgggcacaagcCCTGTCTGCTCGCCCGCTGTCCCTGTTCGCTTCTGCCTGGAGCTCCCCAGCTTGGTTGAAGACCAGTGGTGAGCTCATAGGGAAGGGCTTGCTTAAAGGAAAGCCTGGGGGCAAAGAGTATAAAACCTGGGCACAGTACTATATCAGATTTCTGGAAGAGTACAAGAAGCACAATCTCTCATTCTGGGCGTTGACTACAGGAAATGAACCTACTGCAGGTGAAATAACCAATTACAGCTTCCAGGCTTTGGGTTTCACTCCTGAGCTCCAGCGTGACTGGATTGCTCTGGACCTCGGTCCTGCTCTCCATTCATCCCCATATGCCAAAACCCGCCTTATGATCCTGGATGACCAGAGACTCCTGCTTCCTCACTGGGCCAAAGTGGTTCTGAGTGACATTCATGCTGCTCGATATGTCCATGGCATCGGCGTTCACTGGTACTTGGATAAACTAGTTCCTGCCAAAGTCACACTGACGACCACACATGACCTTTACCCAGAGTACTTCATTTTGGGCACAGAGGCGTGTCCTGGTTGGACAAAACTTGACCGTGGTGTGCGGTTGGGCAGCTGGGAAAGAGCTGAATATTACGCCCATGACATTATAGAGGACCTAAATAACTATGTGATCGGATGGACAGACTGGAACTTAGTGCTAGATATGAATGGTGGACCAAACTGGGCCAAGAATTTTGTGGACAGTCCCATTATCGTGGACCAAAGCAGGGATGTCTTCTACAAGCAGCCGACATTCTACAGCATGGCCCATTTCAGCAAGTTCCTGTGGGAGGGGTCTCAGAGAATAGGTGTGTCCCTTTCTGAACACACCTCACTGGAATGTTCTGCCTTCATCAGACCTGATGGTTCAGTAGTGCTGATCGTTTTAAACAGGTCTGATGCTGAGGTGCGATTTGAAGTCTGGGATCAGACCTTGGGATTTCTGCCTGCAAGCGCTCCCCCTCACTCCATCCTCACACTACTGTGGGCTACATCCTAATTACCAGTATTCAAGCATAGCCTTAAGCTACAATCTGTTTATGTCCCTTGACACAGTCATGCAAACGTTAACAGAACAATAGACCACTGGATATTTCAGAGATGATGCAAATAATCATACTTAAAATCATTTCAGTGCTAATCAAACTAACATATAGCCAAAACTGCATGCGGGATAGCTGTCAGGAATCCAGTCCACTAACAGTATTTTGAGTGACACATAGTGGGGGAAAAGAACTTTTGTCTTGACAAAATTAGTTTTTTGAGTTCACAGGGTAATCAAGGCATGATCCTGggactgaaaatgaataataatgaattttgcACTCTTGTACTGTTTGGAACAGTTGGCAGTGATTGATTCAGCCTGTTttgattctgaaaaaaaaaaaaaaaagattctggaGATTTATAGTCATTAtcttttcaattaaaaaagtgttatgtGTAAGTGTGAGAGCGTGAAAAAAGGAGATGTGGAAGATTGAATATGCATAATTTGTCATTAACACTGAGAAACTGCATTTACAGTCACTTGAAACTTCAGCATGTGCTTGACCTGCTTTTAATGTGATAATCTGGTAGACAGTTTGAAGCAATGTGTACATAATTGGATGGAAACATTTCCACGAGGTTTTGACAGTAAAGACTGTTATTATCTTAAGAAGACAGCGTTGGTTTTAGGAGGcttgtgatgtgtttaaaaatgcatatgCAGTGACAGAGTGCTCGGTCAGAGGAATGTAAGAGGCTACAGTTCAAATACAAACAACAGTAACCTTTGTGATCCACGTCTGACTTTCATTACATGAATTTCATTAATGTCGTTAACAAAGCTAATTGGTATTGCTCATCGATCATACACAAGCATCATGACCTTGTGTATAACCAATAGCAATCTGTCAGgctgaaaatgtggaaaattagTTTAATTAGTTTATGTATCAAACTGATCACTTTTAAATGAATACTAAAATGCAACCAAAAttagttgggaaaaaaaaaaaaa

Function

symbol description
gba Enables glucosylceramidase activity. Acts upstream of or within neuron cellular homeostasis; regulation of ossification; and swimming. Predicted to be located in lysosomal membrane. Is expressed in brain; fin; and liver. Used to study Gaucher's disease. Human ortholog(s) of this gene implicated in Gaucher's disease (multiple); Lewy body dementia; Parkinson's disease (multiple); and Parkinsonism. Orthologous to human GBA (glucosylceramidase beta).

NR:

description
glucosylceramidase isoform X1

GO: NA

KEGG:

id description
K01201 GBA, srfJ; glucosylceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939690.2 True 2744 mRNA 0.44 11 22032468 22038626
XM_026939691.2 False 2741 mRNA 0.44 11 22032468 22038626

Neighbor

gene id symbol gene type direction distance location
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding downstream 13231 22008235 ~ 22019237 (-)
deptor deptor,LOC107685573 coding downstream 106784 21893147 ~ 21925684 (-)
col14a1a col14a1 coding downstream 150258 21792011 ~ 21882210 (-)
mtbp mtbp coding downstream 260761 21748221 ~ 21771707 (-)
mrps2 mrps2 coding downstream 518113 21509640 ~ 21514355 (-)
dap3 dap3,LOC106597783 coding upstream 2509 22041135 ~ 22045666 (-)
rusc1 rusc1 coding upstream 48723 22087349 ~ 22101094 (-)
fdps fdps,LOC107673012 coding upstream 64471 22103097 ~ 22110703 (-)
LOC113542354 NA coding upstream 75791 22114417 ~ 22132220 (-)
si:ch211-149k23.9 LOC108266957 coding upstream 94806 22133432 ~ 22140874 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding downstream 72169 21872276 ~ 21960299 (-)
LOC113542638 NA non-coding downstream 94683 21934683 ~ 21937785 (-)
G12377 NA non-coding downstream 102325 21927459 ~ 21930143 (-)
G12373 NA non-coding downstream 173628 21857615 ~ 21858840 (-)
G11974 NA non-coding downstream 497269 21493358 ~ 21535199 (-)
G12498 NA non-coding upstream 294499 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 651350 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 652345 22690971 ~ 22691193 (-)
G12642 NA non-coding upstream 652662 22691288 ~ 22691526 (-)
G12656 NA non-coding upstream 710987 22749613 ~ 22753941 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 757127 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2208785 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2285585 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2286528 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2329308 19702611 ~ 19703160 (-)
aicda aicda other upstream 647781 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 862725 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1081846 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1094300 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1438532 23477158 ~ 23527323 (-)

Expression


Co-expression Network