dap3 (dap3,LOC106597783)


Basic Information

Item Value
gene id dap3
gene name dap3,LOC106597783
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22041135 ~ 22045666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939693.2
TGGTGATTCGTGACGTCACCCCCCTCCGTGAAACAAACATGGCGGCGCCCATCAGCGTGTGTATGTGACAGGACGAAGCCTTATTTCTCCACTTCTTGTCATCGTTAACAGTCAGGCTTGTATGAATTAGTATCTTTGTGGATGGTGAGCAGCTCCTTTTGAAACATGAACCTGAATCTCCCAAGACTTTGTCACAGATTATGTGTAACTGCATCTCAGACACGTCCACTTCACATCAGTGGTAATGGGCAGCAGCTGGATAAGACTGCAGTGGCTGTAGATTCTGATGTGTCGAATCGTTTCTCCATTTTCAGGACTTCAGAGAATGATCCGGCATGCCATATGGGGCATCATGCTGGTCAGTACTACACCCTTCCTCCTGCACATGTGCGCACAATGTTTCCCCATGGCTTGCCTTCACGCTTCCAGATGCAGATAAAGACATTTAATGAAGCTTGTGTTATGGTGAGACAGCCAGCACTGGAGCTCATCTCTTATTTGAAAAGAGCAGACTATAGCAAACCTGCCGTGCGCTATCTGCTCTATGGAGAGACCGGCTGTGGGAAGACCATGTCTCTGTGCCACGCGCTGCATTTCTGTTCCACTCAAGGCTGGTTGGTTCTGCACATACCAGATGCTCATTTGTGGGTTAAAAACTGTAATGAGCTGCTTCCCTCATCATCTCGTCCAGGTCGCTTTGATCAGCCAATCCAGGCCTCCCAGTGGttgaagaattttaaaatcactAATGAGCATTTTCTGTCTAAGATAAAGACAACAAAGCGGTATGTgtggacaaagagagagagtacagaAGAAGGACGGCCTTTAGGAGAACTGGTTAATCAGGGTGTGACTCGTGTGAAGAGCAGCAGTGACGTGGTAGGTGCGTTACTGCGTGAGCTGAAGCTGCAGGTTGGAAGTGCTACAGATGGAGCTTTCAGACTGGCTGTGGCTGTAGATGGAGTCAATGCTCTGTGGGGCAGGACAACTCTGAAGAAGGAGGACAAGAGTGAGGTGTCCGCAGACGAGCTAACGCTTATTCACAACCTGAGAAAAATGCTGAGGAATGACTGGaGTGGAGGAGCCATTCTTACAACGCTGTCTCAGACAGGGTCTCTGTACACGTCTCGCTCTGATTACCTTCCAACTCAGCTGCTGGGAGAGGTGGGATTTGATAAGATGGACCCATTTGTGCCAATCCCAGTTTCAAAATACAACGATCAGGAGTTTGAGAGCTGTTATCTGTATTACATGGACCGTAACTGGCTGCAGCATCCTCACAgtcaaacagaagaaggaaagaaagaactcATTTTTCTCAGCAACAGAAATCCGTCCATCTTGGAAAGACTGTGTGCCTTCCTGTAATAAATGTTCCCTCCGTTTTGCGCTCTCTCTCCCGTCTCTGTCTGTGTAAAATTATCCATGATACAGTCCACATATGCCACTGctgtctttaataataaaaagcctTTGAAGAAAAA

Function

symbol description
dap3 Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3).

NR:

description
28S ribosomal protein S29, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939693.2 True 1487 mRNA 0.47 13 22041135 22045666

Neighbor

gene id symbol gene type direction distance location
gba gba,LOC107596705,LOC107598447 coding downstream 2509 22032468 ~ 22038626 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding downstream 21898 22008235 ~ 22019237 (-)
deptor deptor,LOC107685573 coding downstream 115451 21893147 ~ 21925684 (-)
col14a1a col14a1 coding downstream 158925 21792011 ~ 21882210 (-)
mtbp mtbp coding downstream 269428 21748221 ~ 21771707 (-)
rusc1 rusc1 coding upstream 41683 22087349 ~ 22101094 (-)
fdps fdps,LOC107673012 coding upstream 57431 22103097 ~ 22110703 (-)
LOC113542354 NA coding upstream 68751 22114417 ~ 22132220 (-)
si:ch211-149k23.9 LOC108266957 coding upstream 87766 22133432 ~ 22140874 (-)
atg12 atg12,LOC107692547 coding upstream 95337 22141003 ~ 22143447 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding downstream 80836 21872276 ~ 21960299 (-)
LOC113542638 NA non-coding downstream 103350 21934683 ~ 21937785 (-)
G12377 NA non-coding downstream 110992 21927459 ~ 21930143 (-)
G12373 NA non-coding downstream 182295 21857615 ~ 21858840 (-)
G11974 NA non-coding downstream 505936 21493358 ~ 21535199 (-)
G12498 NA non-coding upstream 287459 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 644310 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 645305 22690971 ~ 22691193 (-)
G12642 NA non-coding upstream 645622 22691288 ~ 22691526 (-)
G12656 NA non-coding upstream 703947 22749613 ~ 22753941 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 765794 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2217452 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2294252 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2295195 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2337975 19702611 ~ 19703160 (-)
aicda aicda other upstream 640741 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 855685 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1074806 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1087260 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1431492 23477158 ~ 23527323 (-)

Expression


Co-expression Network